Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1201 ATGTCTGGTTCAAAGGAAGGAGTGATTATTGGAGAAAGAGAGCATAATGATGAGGAGCAGAGGAAGGACTATGTGGATCCACCAGCAGCTCCATTGATGGGGTTCTCAGAGTTGAAGAAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTTATGGCAACATTACTTTTCCTTTATATCACCATAGCCACTGCCATTGGAAACAACAATGCACAAACAACAGGGCCCTGTTATGGCGTTGGGGTTCTGGGCATAGCATGGGCCTTCGGCGCCGTCATCTTCGTCCTTGTTTACTGCACCGCCGGTATTTCAGGCGGCCATATCAACCCCGCCATCACGTTCGGGATGCTGTTGGCCAGAAAGTTGTCGCTGATTCGCGCGGTCGCTTACATAGCGGCGCAGTCTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAAGCTCTCATGAGGCACGCTTACAACAGCAACGGCGGCGGAGCCAATGTCGTCGCCGCCGGGTTCAGCAAAGGCGCCGCCCTTGGCGCCGAGATCATCGGCACTTTTTTGCTGGTGTACACTGTATTCTCCGCCACTGACCCAAAAAGAAACGCCCGAGACTCCCATGTTCCTGTTTTGGCTCCATTGCCTATCGGACTTGCGGTCTTTGTAGTGCATCTAGCTACGATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGCTTGGGCGCTGCCGTCATGTTCAACAACAGAAGAGTTTGGAGTCAACATTGGATATTTTGGGTTGGGCCATTTGTTGGGGCGTTGGCAGCGGCGGCGTACCATCAATACGTTCTCAGAGCGGCGGCTGTCAAAGCTCTTGGATCCTTTCGTAGTAACCGTTCCGGCTAG 870 53.1 MSGSKEGVIIGEREHNDEEQRKDYVDPPAAPLMGFSELKKWSFYRAVIAEFMATLLFLYITIATAIGNNNAQTTGPCYGVGVLGIAWAFGAVIFVLVYCTAGISGGHINPAITFGMLLARKLSLIRAVAYIAAQSLGAIAGVALVKALMRHAYNSNGGGANVVAAGFSKGAALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVMFNNRRVWSQHWIFWVGPFVGALAAAAYHQYVLRAAAVKALGSFRSNRSG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24784472 24787928 + CmPI595203_02g012010.1 Cmu02g1201 409250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1201 289 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Cmu02g1201 289 NCBIfam MIP family channel protein 49 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 Pfam Major intrinsic protein 37 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 SUPERFAMILY Aquaporin-like 37 273 IPR023271 -
Cmu02g1201 289 Gene3D Glycerol uptake facilitator protein. 30 289 IPR023271 -
Cmu02g1201 289 MobiDBLite consensus disorder prediction 1 23 - -
Cmu02g1201 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 285 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cmu02g1201 289 FunFam Probable aquaporin PIP1-2 30 287 - -
Cmu02g1201 289 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 CDD MIP 45 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1201 289 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1201 Cmu-Chr2:24784472 Cmu02g2107 Cmu-Chr2:34686464 2.90E-105 dispersed
Cmu02g0425 Cmu-Chr2:3874388 Cmu02g1201 Cmu-Chr2:24784472 1.00E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1201 K09872 - gmx:100306103 436.802