Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1216 ATGAGAGCTCATCGTTTGAGCTTCTTCACTTCCTTTATATTTTTATTCCCTACATTCATCACAGCCACAGGCTTCACGCTTCTCCACGATTCCTCCATTTCCTACAGGAGAATTCTGCATCAGCCGCTCTTTCCGGTTGCCTCTGAGCCGCCGCCTGACATTGACTTGTCTCCACCGCCCCCGCCGCCGGATTCTCCTTCCGACGATCAGCCGTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGAGTCAACCTCCTCCTTCCTCATCTAATGGAACTATGCCAATCCCTGCCTCTACGGCGCAACCGTCCAAGCCCACCAAGACTGTTGCAATTGCCATTTCCGTTGGGATTGTGACTTTGGGGATGCTTTCAGCTCTCGCTTTCTTTTTGTATCGTCACCGTGCGAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAATAATCCGGAGAGATTTGTGGAGGACTCGAGAGCGCCGCCCTCGAGTTTTTTCTATATCGGAACTGTTGAGCCGAGTCAGAGCTCTATTGTGGAGCAGAATGGTGCCAATGGTGCTAACAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCAGAGTTGCAGCCACTGCCGCCACTGCCAAAACCACCGGTGGCTATGTCGCCTCCGGCTTTGTCGTCTTCCGATGAGGAAAGCCAGGACACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCACGATGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCCACGGCAAGTTTCAAGAATGACCATATGAATTCCAATCCTCCTCCCATTCCTCATTCCAAAAGGACGTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGCACTTCGTCTCAGCCTCAGCCTCAGCCTCAGCCACCGCCGCCGCCGCCTCCTCCACCGCGTCCGTTTGATGATTTTCGCGAAATTCCGAATTCGAAAGAGACAATGCCTTTCTCGTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAACCACATTTCCTCAAGTTCCGCAACCTGCTGTAGCTCCACCTCCACCTCCACCTCCGCCTCCGCCGCCCCCACCCCCACCCCCACCCCCACCCCCACCTCCACCTCCGCGACTACCGGCGCGTCCGGTCTCCTATTCAACGCCACAAAAACTAGGGTTATCAGAAACCAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAGTCACAATCCTACTCAACAGCGAGGTCAAACTCTTCCCCGAAATCCACACCGAGTTCTGTGACAACAAATTCTGCTAAAGAAGACGTTGCCCCGAGGATTAATTCTATGGAGAGGCTCGAAGCAGAGGATGCAGAAGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACCTCAGACCGAGCTACAGTTTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACACTGTTCGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCAAAAAAGTCTCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGAAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTCAGAGAGTACTGTGGTGATGTTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTAAGGAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTGAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCGGTTCTTAAGACAGGAAATAGGATGAATGTTGGTACGAATCGTGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTCGATATAAAGGGAACGGATGGGAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTTCGCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTAAAAAAAGCGGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAGATGGGGCTTGAAAAAGTAAGGTTGGTTTTGCAATTTGAAAGGCCAGGAATGCAGGGAAAATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATTAAAGCTGACGAAAGGCAAGCTTTATCGCTTGTGAAAGCAGTCACAGAGTATTTCCATGGTGATGCTGCTAAGGAGGAAGCACATCCCTTCCGAATATTCATGATCGTTCGGGATTTCCTAACTGTACTGGATCAAGTATGCAAAGAAGTTGGGAGAATGCAAGACGGAGTAATGGTTGGTGCTGCCAGATCCTTTCGGATATCTGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAACGTCAGACACGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA 2769 48.5 MRAHRLSFFTSFIFLFPTFITATGFTLLHDSSISYRRILHQPLFPVASEPPPDIDLSPPPPPPDSPSDDQPFFHELPTSPDQSQPPPSSSNGTMPIPASTAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGNNPERFVEDSRAPPSSFFYIGTVEPSQSSIVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNPPPIPHSKRTSPKSRFSVSSTKRTSSQPQPQPQPPPPPPPPPRPFDDFREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSTTFPQVPQPAVAPPPPPPPPPPPPPPPPPPPPPPPPRLPARPVSYSTPQKLGLSETRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSVTTNSAKEDVAPRINSMERLEAEDAEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDVSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRSQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFERPGMQGKFFNSMKTFLKEAEEEIVRIKADERQALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTVLDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24998503 25002454 + CmPI595203_02g012160.1 Cmu02g1216 409265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1216 922 Coils Coil 818 838 - -
Cmu02g1216 922 ProSiteProfiles Formin homology-2 (FH2) domain profile. 476 897 IPR015425 -
Cmu02g1216 922 PANTHER FORMIN-RELATED 351 916 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cmu02g1216 922 MobiDBLite consensus disorder prediction 208 224 - -
Cmu02g1216 922 Pfam Formin Homology 2 Domain 481 871 IPR015425 -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 49 106 - -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 374 409 - -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 466 481 - -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 198 481 - -
Cmu02g1216 922 SMART it6_source 476 886 IPR015425 -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 414 464 - -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 85 106 - -
Cmu02g1216 922 Gene3D Formin, FH2 domain 470 882 IPR042201 -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 49 68 - -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 310 329 - -
Cmu02g1216 922 SUPERFAMILY Formin homology 2 domain (FH2 domain) 393 882 - -
Cmu02g1216 922 MobiDBLite consensus disorder prediction 228 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1216 K28090 - - csv:101208011 1434.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1699 Cmu-Chr1:30725826 Cmu02g1216 Cmu-Chr2:24998503 2.30E-35 dispersed
Cmu02g1216 Cmu-Chr2:24998503 Cmu07g0289 Cmu-Chr7:2906779 3.10E-145 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu07g0289 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.7e-190 662.5
Cmu11g0091 . 465 941 FH2 protein (formin) Gene Family AT3G25500 66.9 2.2e-166 583.6
Cmu02g1216 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.3e-142 501.9
Cmu03g2293 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.1e-104 377.1
Cmu07g0289 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Cmu02g1216 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.2e-126 448.4
Cmu02g0849 . 283 595 FH2 protein (formin) Gene Family AT4G15200 55.3 3.5e-52 203.0
Cmu05g1539 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cmu05g1539 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 69.2 4.4e-168 589.0
Cmu02g0849 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Cmu07g0289 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.2e-102 369.0
Cmu02g1216 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Cmu07g0289 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.9e-136 481.5
Cmu11g0091 . 478 923 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Cmu03g2293 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.0e-105 378.6
Cmu05g2548 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.4e-126 448.7
Cmu07g0289 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 1.0e-99 361.7
Cmu02g1216 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Cmu02g1216 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Cmu05g1539 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.2e-106 382.5
Cmu07g0281 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Cmu07g0281 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 66.0 0.0e+00 1225.7
Cmu06g1291 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Cmu06g1648 . 1383 1704 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cmu04g1244 . 980 1284 FH2 protein (formin) Gene Family AT5G07650 71.1 2.2e-118 423.7
Cmu05g1671 . 1107 1429 FH2 protein (formin) Gene Family AT5G07650 65.0 3.7e-110 396.4
Cmu06g1291 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cmu07g0281 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.5e-108 389.8
Cmu06g1648 . 1310 1697 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cmu04g1244 . 903 1282 FH2 protein (formin) Gene Family AT5G07770 63.8 9.4e-127 451.1
Cmu05g1671 . 1031 1421 FH2 protein (formin) Gene Family AT5G07770 59.4 1.2e-118 424.1
Cmu06g1291 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.4e-116 415.6
Cmu07g0281 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Cmu05g1671 . 1023 1429 FH2 protein (formin) Gene Family AT3G32400 76.2 1.3e-169 593.2
Cmu06g1291 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Cmu06g1648 . 1310 1704 FH2 protein (formin) Gene Family AT3G32400 65.2 8.7e-142 500.7
Cmu07g0281 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.6e-141 497.3
Cmu04g1244 . 873 1282 FH2 protein (formin) Gene Family AT3G32400 58.6 7.6e-130 461.1
Cmu05g1671 . 21 1429 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1156.7
Cmu06g1291 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Cmu06g1648 . 1311 1704 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cmu04g1244 . 904 1284 FH2 protein (formin) Gene Family AT5G07780 58.2 2.0e-111 399.8
Cmu05g1671 . 1032 1422 FH2 protein (formin) Gene Family AT5G07780 54.3 3.3e-103 372.5
Cmu07g0281 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.2e-102 367.9
Cmu06g1291 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Cmu06g1648 . 1 1713 FH2 protein (formin) Gene Family AT5G07740 60.6 0.0e+00 1133.2
Cmu06g1648 . 1382 1711 FH2 protein (formin) Gene Family AT5G07760 74.4 3.3e-128 456.4
Cmu04g1244 . 979 1282 FH2 protein (formin) Gene Family AT5G07760 70.5 3.2e-115 413.3
Cmu06g1291 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.3e-110 396.0
Cmu05g1671 . 1106 1438 FH2 protein (formin) Gene Family AT5G07760 64.0 2.0e-109 394.0
Cmu07g0281 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36