Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1227 ATGTGGGATCTCAATGATTCTCCCGATTATGGCGGAACTGATGAATTTGAGGTTCTTTCATCAATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTTCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCGATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAGCCACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAATGATAGTTCGATCTCCACCGTCCGTCGAAATGATGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA 1461 47.02 MWDLNDSPDYGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKSHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSEMIVRSPPSVEMMKHGRLETPMELQTLHNYSPQINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFLQRPS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25101785 25104907 + CmPI595203_02g012270.1 Cmu02g1227 409276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1227 486 CDD AP2 142 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677(InterPro)
Cmu02g1227 486 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Cmu02g1227 486 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677(InterPro)
Cmu02g1227 486 CDD AP2 233 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 FunFam AP2-like ethylene-responsive transcription factor 233 293 - -
Cmu02g1227 486 SMART rav1_2 234 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 SMART rav1_2 142 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 348 - -
Cmu02g1227 486 Pfam AP2 domain 233 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 Pfam AP2 domain 142 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1227 486 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1227 Cmu-Chr2:25101785 Cmu02g2070 Cmu-Chr2:34359105 4.40E-90 dispersed
Cmu01g1645 Cmu-Chr1:30163280 Cmu02g1227 Cmu-Chr2:25101785 1.20E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5749 PF00847 AP2 2.00E-09 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1227 K09284 - csv:101208665 782.326