Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1231 TCATACCGCGCATTACAACGGAAATCTGCAAATATGGATGTTTTGGTCGCTGTAGGCACCAATGCAGCTTACTTTTACTCAGTATACATAGTTTTTAAAGCATCCACTTCCAACTCTTTTAAGGGGAAAGATTTCTTTGAGACTAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGCAAATCATCAGATGCTTTAGCACAGCTTGCTCATCTTGCTCCTGATACAGCTTGTTTGATGACCTTTGATGATCATGGAAATTTGCTATCAGAGGTGGAGATTGATACCCAACTCATACAGAGGAATGACATAATTAAGATTGTTCCTGGGGCAAAAGTTCCTGTTGATGGGGTTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACAGGAGAAGCAAGATCCATTGGCAAATCAACTGGTGATAAGGTTATTGGAGGGACTGTCAATGAAAATGGATGCTTATTTGTTAAAACCACTCATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTCGTGGAATCGGCTCAGCTATCACGAGCCCCAGCTCAAAAATTAGCAGATCAGATATCAAAGTTCTTTGTTCCTGTTGTTGTTGTGGCAGCATCTGTGACATGGCTGGGATGGTTAATTTGTGGAGAACTTGGTTTATACCCCAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCCCTGCAATTTGCCATTTCAGTGCTGGTGATTGCATGCCCGTGTGCCCTTGGTTTAGCAACACCGACTGCGATCATGGTTGCGTCGGGAAAAGGTGCTTCTCTAGGTGTGCTCATTAAAGGGGCAAGTGCACTTCAAAATGCATACAAGGTGAAAACAGTAGTTTTTGACAAGACTGGAACTCTGACAATTGGGAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGTGATGTAGCAATAGCAATTGAGTCAAACAGCGAACACCCTCTAGCAAAATCTGTAGTGGAGCATGCAAAGAAAATGAGAAAGAAGTTTGGGGCCCGAAGTGAATGTCGCAAACGCATCCAGAACTTCGAGGTGTTCCCGGGAGAAGGGGTTGGAGGAAGAATTGATAGAAAGACAGTTTTAGTAGGAAACAGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTTGATCGGTATGTTATAGAAAACGAGCGACTGGCTCAAACATGTGTCTTGGTGGCTATTAATGGCAGGGTAGCAGGAGGTTTTGGTGTTATAGATGCGCCAAAGCCTGGGACTAAAGCTGTCATATCATTTCTTCGTTCGATTGGCATCTCAACCATAATGGTCACCGGAGATAACTGGGCCACAGCCTTCGCGGTTGCAAGAGGGGTCGGGATTAGTGAAGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATTAGATCCTTAAAGACGTCAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAATGACTCACATGCCTTAGCTGCAGCTGATGTCGGTATTGCAATTGGTGCTGGAACAAATATTGCTATTGAAGCAGCTGATATTGTTCTAATGCGAAGCAATTTAGAAGATGTGGTTACTGCTATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATTTGGGCTCTTGGCTACAATATCATCGGCATGCCTATTGCTGCCGGAATCCTATATCCCTTCTTTGGAATCCGATTGCCACCGTGGCTTGCCGGTGCATGTATGGCTGCTTCCTCCCTTAGTGTTGGTTTCCAGCCGATAACCCACCTCAGTTTTAGCTTCGTATTTTCTTTGGATTTTGGTTTCCCACTGTATGAATTGGACCCCGATCCGAACCCCCATTGTGGATTTGGGTTTAAGTTTTCATCGGCAGCTTCGCCAAAGTCAATGGCGTCGAAGGCTTCTTTGCCTTCTCCTTCGGCCGACAGATCGGACCTGCACGATGACACCCAGATAATGATACCACGAGGACAAGATCCTACTCCTAAGGAGATCTTATCACTCATTGAATTTCTAAAGAAGCAAGTTGCTGGCGAACGTTGTAACTCCGTACAGAAAAGAATGGAAGAAAACAAGCAGAAGTTGGTTGCCATCACCACTCACTTGTTGAAATCATCAACAGAAAGAAGGATAAGAAGGACAAGTGATTCAGATAAGGGGGTGGATCTATTGACGAAGAGGCAGAAAGATGCACTTGATATGCAGAATGGTATAGATGTAAGTGATGGGGAAAATGACCAATCTCAAGAAGATGGCCATGCATCTTCTGCAGTTCTTCTTGGATCTAATGTTGCAGTAAGAAATGCTGTACGACCTATTAAGCTTCCTGAAGTTAAAAGATTGCCTCCTTATACTACATGGATATTTTTGGACAGAAACCAGAGAATGACTGAAGATCAATCTGTGGTTGGTCGAAGGAGAATTTATTATGGTCAAAGTGGAGGAGAAGCCCTCATTTGCAGTGACAGTGAGGAAGAAGTAATTGATGACGAAGAGGAAAAGAGAGATTTTGTGGAATCTGAAGATTATATACTTCGCATGACAATGAAAGAAATTGGTTCATCTGATCTGGTGCTAGAGTCCCTTGCCAATTGTTTCTCTAGAAGTCCTGGTGAAATAAAGGCAAGATATGAAGTGCTTACCCAGGGAGAAAGGGCTATAGGGTGTTTTAATAATAGGATCAATGAGGAGATCTCACATATTGGAAGTACTCTTCTTGATAAAGATCTTGATGCAGCTCTTGATTCCTTTGACAATCTATTTTGCCGTCGTTGCCTTGTCTTTGATTGTAGACTACATGGTTGTTCCCAAGATCTTGTCTTTCCTGCTGAGAAACAACCTAAATGGGGTCCTGTAGGTGAGGAAAATGCACCATGTGGTCCACTCTGCTATCGATCAGTGCTGAAATCAGACAAAAATGGTACAGGGGGTTCTCCACTTCGCAGTGACTTGGAAGAAAAACATCCCATGTCATCTGATGGTACTGGAGCTCAAATCTCTACGAAGAAGAAATCTTCTTGTAAAACTGGTCGAAGAAGGGCAAAATCCTATCAAAGTGAAAGTGCCTCATCAAATGCAAAGAACATATCAGAAAGCAGTGAGTCAGAGAATGGACCCAGGCAGGATGGGAATACTATTCATCAATCACCTCCACCAAATTCTAAGATAACAGGAGCGGGTGGAATTCGAAAAAGGAACAGCAAGCGTGTTGCTGAGCGTGTTCTCATTTGCATGCAGAAAAGGCAGAAGAAAATGGCTGCTTCTGAGTCAGAATCTCTAGCCAGTGTAGGTCATTGTCCAAATGATGTGAAATTAAAATCTAACTCATGTAAAGAAAATGACGATACTAGTTCTTCTTCACGTAAGAATATTAGATCTCCTATACCTGGAAGGTCTAGGAGGAGGGAATCCCTGACTCAGAAATGCAACAAATTTGACCAGAATGAAACACTCAATAATTCATCAAATGAGATAATTACTCATCTACCAGCCGACAGTTGTGATGACAACTCAAGGAAAGAAGAGTGTGTGGATGAAAATTTATGCAAGCAGGACTTGGCAGATGATAAATCTTGGAAGGCTATTGAAAAAGGGCTCTATGAGAAGGGTATTGAGATTTTTGGTAGGAACAGCTGCTTAATAGCAAGGAATTTACTAAATGGGATGAAGACCTGTTGGGAGATTTTTCAATACATGAATTATTCTGAGAACAAGAATGGCAGCCAAGTGGGTGATGGGTCAAATCCTCATCTTGAAGGTTACACCAAGGGTAATAATGAAGTGAGAAGAAGGTCAAGATTCTTACGTAGAAGGGGTAGAGTTCGTCGACTGAAATATACCTGGAAATCAGCTGCTTACCATTCTATTCGGAAGCGAATAACTGAAAGGAAAGATCAGCCGTGCAGACAGTATAATCCATGTGGTTGCCAAACTGCCTGTGGAAAGCAGTGTGCCTGTCTTTTAAATGGCACCTGCTGTGAGAAGTACTGTGGGTGCCCTAAGAGTTGCAAGAATCGTTTTAGAGGATGCCATTGTGCCAAAAGTCAATGTCGTAGTCGTCAATGTCCTTGTTTTGCAGCAGATAGAGAATGTGATCCAGATGTTTGTAGGAATTGTTGGGTCAGCTGTGGTGATGGTACTCTCGGGGTTCCCAACCAAAGAGGTGACAATTATGAGTGCAGGAACATGAAGCTTCTTCTGAAACAACAACAAAGAGTGTTACTCGGAAGATCTGATATATCTGGTTGGGGAGCATTTCTAAAGTTTGTTCTTGATGCGTACCGAAAGGGCGATAAATTAAAATTTGCTAATCATTCTCCGGATCCAAACTGCTACGCCAAGGTCATCATGGTTGCGGGAGATCACCGGGTTGGCATCTTTGCCAAGGAAAGAATCAGTGCTGGGGAGGAACTCTTTTATGATTATAGATATGAGCCTGATCGAGCCCCGGCTTGGGCAAGGAAGCCTGAGGCATCGGGGTCAAAAAAAGACGACGGTGCTCCATCAAGTGGACGAGCAAAGAAACTTGCTTAA 4611 42.94 SYRALQRKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSMLISFILLGKYLEVMAKGKSSDALAQLAHLAPDTACLMTFDDHGNLLSEVEIDTQLIQRNDIIKIVPGAKVPVDGVVISGESNVNESTITGEARSIGKSTGDKVIGGTVNENGCLFVKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAASVTWLGWLICGELGLYPKHWIPKGMDEFELALQFAISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKTGTLTIGRPEVVSVVLFSTFPMQELCDVAIAIESNSEHPLAKSVVEHAKKMRKKFGARSECRKRIQNFEVFPGEGVGGRIDRKTVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCVLVAINGRVAGGFGVIDAPKPGTKAVISFLRSIGISTIMVTGDNWATAFAVARGVGISEVFAEMDPIGKANKIRSLKTSGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFFGIRLPPWLAGACMAASSLSVGFQPITHLSFSFVFSLDFGFPLYELDPDPNPHCGFGFKFSSAASPKSMASKASLPSPSADRSDLHDDTQIMIPRGQDPTPKEILSLIEFLKKQVAGERCNSVQKRMEENKQKLVAITTHLLKSSTERRIRRTSDSDKGVDLLTKRQKDALDMQNGIDVSDGENDQSQEDGHASSAVLLGSNVAVRNAVRPIKLPEVKRLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYGQSGGEALICSDSEEEVIDDEEEKRDFVESEDYILRMTMKEIGSSDLVLESLANCFSRSPGEIKARYEVLTQGERAIGCFNNRINEEISHIGSTLLDKDLDAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPKWGPVGEENAPCGPLCYRSVLKSDKNGTGGSPLRSDLEEKHPMSSDGTGAQISTKKKSSCKTGRRRAKSYQSESASSNAKNISESSESENGPRQDGNTIHQSPPPNSKITGAGGIRKRNSKRVAERVLICMQKRQKKMAASESESLASVGHCPNDVKLKSNSCKENDDTSSSSRKNIRSPIPGRSRRRESLTQKCNKFDQNETLNNSSNEIITHLPADSCDDNSRKEECVDENLCKQDLADDKSWKAIEKGLYEKGIEIFGRNSCLIARNLLNGMKTCWEIFQYMNYSENKNGSQVGDGSNPHLEGYTKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCACLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGVPNQRGDNYECRNMKLLLKQQQRVLLGRSDISGWGAFLKFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKDDGAPSSGRAKKLA 1536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25202759 25226145 + CmPI595203_02g012310.1 Cmu02g1231 409280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1231 1536 ProSiteProfiles CXC domain profile. 1316 1415 IPR026489 -
Cmu02g1231 1536 Gene3D - 266 562 IPR023214 -
Cmu02g1231 1536 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 595 1536 IPR025778 GO:0031519(InterPro)
Cmu02g1231 1536 NCBIfam HAD-IC family P-type ATPase 52 583 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu02g1231 1536 SUPERFAMILY HAD-like 297 608 IPR036412 -
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 735 754 - -
Cmu02g1231 1536 Pfam haloacid dehalogenase-like hydrolase 295 520 - -
Cmu02g1231 1536 Gene3D - 67 189 - -
Cmu02g1231 1536 SFLD p-type atpase 281 558 IPR044492 -
Cmu02g1231 1536 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 609 - -
Cmu02g1231 1536 SMART set_7 890 1508 IPR001214 GO:0005515(InterPro)
Cmu02g1231 1536 NCBIfam heavy metal translocating P-type ATPase 12 610 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cmu02g1231 1536 Gene3D - 306 384 IPR023299 GO:0000166(InterPro)
Cmu02g1231 1536 Gene3D - 385 437 IPR023299 GO:0000166(InterPro)
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 1510 1529 - -
Cmu02g1231 1536 ProSitePatterns E1-E2 ATPases phosphorylation site. 301 307 IPR018303 -
Cmu02g1231 1536 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 293 IPR023298 -
Cmu02g1231 1536 Pfam SET domain 1445 1501 IPR001214 GO:0005515(InterPro)
Cmu02g1231 1536 Gene3D SET domain 1447 1508 IPR046341 -
Cmu02g1231 1536 ProSiteProfiles SET domain profile. 1367 1502 IPR001214 GO:0005515(InterPro)
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 1131 1145 - -
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 759 779 - -
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 1130 1164 - -
Cmu02g1231 1536 SUPERFAMILY Calcium ATPase, transduction domain A 99 185 IPR008250 -
Cmu02g1231 1536 PRINTS P-type cation-transporting ATPase superfamily signature 529 541 - -
Cmu02g1231 1536 PRINTS P-type cation-transporting ATPase superfamily signature 299 313 - -
Cmu02g1231 1536 PRINTS P-type cation-transporting ATPase superfamily signature 506 525 - -
Cmu02g1231 1536 PRINTS P-type cation-transporting ATPase superfamily signature 135 149 - -
Cmu02g1231 1536 PRINTS P-type cation-transporting ATPase superfamily signature 453 463 - -
Cmu02g1231 1536 PRINTS P-type cation-transporting ATPase superfamily signature 431 442 - -
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 1042 1081 - -
Cmu02g1231 1536 Coils Coil 847 867 - -
Cmu02g1231 1536 Gene3D SET domain 1330 1446 IPR046341 -
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 1510 1536 - -
Cmu02g1231 1536 CDD P-type_ATPase_Cu-like 1 608 - -
Cmu02g1231 1536 MobiDBLite consensus disorder prediction 999 1093 - -
Cmu02g1231 1536 SUPERFAMILY SET domain 1304 1507 IPR046341 -
Cmu02g1231 1536 Pfam CXC domain 1368 1399 IPR041355 -
Cmu02g1231 1536 PRINTS H+-transporting ATPase (proton pump) signature 506 522 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu02g1231 1536 PRINTS H+-transporting ATPase (proton pump) signature 537 562 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu02g1231 1536 SMART CXC_2 1364 1401 IPR033467 -
Cmu02g1231 1536 FunFam Copper-transporting ATPase 1, putative 67 189 - -
Cmu02g1231 1536 Pfam E1-E2 ATPase 98 277 - -
Cmu02g1231 1536 SFLD C1.7: P-type atpase like 281 558 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1231 Cmu-Chr2:25202759 Cmu04g0503 Cmu-Chr4:17768822 4.20E-203 dispersed
Cmu01g0269 Cmu-Chr1:2708457 Cmu02g1231 Cmu-Chr2:25202759 5.70E-206 transposed
Cmu01g2502 Cmu-Chr1:36906474 Cmu02g1231 Cmu-Chr2:25202759 2.80E-163 transposed
Cmu05g0999 Cmu-Chr5:9174089 Cmu02g1231 Cmu-Chr2:25202759 4.00E-09 transposed
Cmu05g1614 Cmu-Chr5:25912741 Cmu02g1231 Cmu-Chr2:25202759 1.00E-84 transposed
Cmu06g0121 Cmu-Chr6:1137014 Cmu02g1231 Cmu-Chr2:25202759 3.70E-09 transposed
Cmu08g0823 Cmu-Chr8:20539288 Cmu02g1231 Cmu-Chr2:25202759 6.80E-10 transposed
Cmu10g1720 Cmu-Chr10:19920812 Cmu02g1231 Cmu-Chr2:25202759 4.30E-94 transposed
Cmu10g1918 Cmu-Chr10:24596310 Cmu02g1231 Cmu-Chr2:25202759 3.30E-144 transposed
Cmu01g1708 Cmu-Chr1:30800004 Cmu02g1231 Cmu-Chr2:25202759 1.80E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5750 PF00702 Hydrolase 3.90E-41 CL0137 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1231 - - - 0.0