Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1236 ATGGAGTGGGTTCGAGGGGACCAACTCGGCCGTGGAAATTTTGCCAAAATCAATTTAGCAAAACCAACAAAGGGGTTTGATCAGTTCCCGCCATTAATGGCCGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGATTTGCCCACAGATTGTTACTTGTTTTGGCGATGGAATCAGTGTTGAAAGTGATGGGGAGAAGTGTTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGTCTTGCGGATGTTGTGAGAATCCATGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAAGGCGATTCTTTGGGGACTCCGGCATGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGGCTTGCTAAAGCGGCTGGAAAAATTACGGCGGCGGAAACAGAGGAGCGATTTGAGTGGAGAGGAACTCCGATGTATATGTCGCCGGAGACTGTGAACGGTGGTGAGTATGAGCCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCTGGAAAGCCGGCGTGGAGGGTTGGGCCGGCAACGGATATATTTGGATTGATGATGAGGATTGGAGTCGGAGACGAAGTACCGGAGATGCCGGAGAATTTATCGGCGGAAGGGAAAGATTTTATCCGGCGGTGTTTGGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAACCACCCATTCGTAGCCGGTGCCGGTGATGCTGTTACATTGAAGGAAGCAGAAGTAGCGACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCCGAACAGGGTTCTGATGAGTGGAGTTTCTGCTCTTCTAATTCGTCGCCGGAGATTTTGAGTAGGGTCCGGCGGCTGGTGACGGGGAAGCCTTTGGACTGGTCTGTGATGGATAGTTGGGTGACAGTGAGGTGA 1035 50.82 MEWVRGDQLGRGNFAKINLAKPTKGFDQFPPLMAVKSSVSSLSSVSLKNEKQILDRIGICPQIVTCFGDGISVESDGEKCYNLFLEYANGGSLADVVRIHGGGLPEFDVRRYTKAILWGLRHVHGNGFVHCDLKLSNVLVFGNGDVKIADFGLAKAAGKITAAETEERFEWRGTPMYMSPETVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPATDIFGLMMRIGVGDEVPEMPENLSAEGKDFIRRCLVKDPRKRWTAEMLLNHPFVAGAGDAVTLKEAEVATESPTGPFDFPEFVCSEQGSDEWSFCSSNSSPEILSRVRRLVTGKPLDWSVMDSWVTVR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25328246 25329280 + CmPI595203_02g012360.1 Cmu02g1236 409285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1236 344 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1236 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1236 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
Cmu02g1236 344 SMART serkin_6 3 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1236 344 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1236 344 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cmu02g1236 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 271 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu02g1236 344 CDD STKc_MAPKKK 2 270 - -
Cmu02g1236 344 Gene3D Transferase(Phosphotransferase) domain 1 2 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0204 Cmu-Chr2:1987388 Cmu02g1236 Cmu-Chr2:25328246 2.30E-49 dispersed
Cmu02g1236 Cmu-Chr2:25328246 Cmu09g0333 Cmu-Chr9:3187795 2.50E-55 dispersed
Cmu06g1189 Cmu-Chr6:22813190 Cmu02g1236 Cmu-Chr2:25328246 4.00E-45 transposed
Cmu01g1638 Cmu-Chr1:30103459 Cmu02g1236 Cmu-Chr2:25328246 1.30E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75302 PF00069 Pkinase 9.60E-51 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1236 - - - 0.0