Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1246 ATGCATTCCTTCTCTTTCATCTTGATTGAGTATGATATTGACGCAGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTCGACATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATTAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTGAAACTATTGAGACCAATTCTGGATGCCGTTGTCGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGATCTTGATCATTCAGTGGATGAACTAAGGGTGCTGTTTGAAAATCGGCAACCGCTATCGAGTAAAGTATACTTTGTATTGCAAACTGAAGCATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTTCGTTATTAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGAGATCCTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGATTTCTCTTGTAACCCGAATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGACTGAATGTTTGCCCGAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCCCCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCGATGTCTCCTCAGACAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCACTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATATTAGTAGACTGTTGCTTTCAAGTTCAGAAGATCAAACGGCCAAATTGGAAGAAAATGGTTGTGATTCGGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCTAAATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACTTCATCTACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAACCAATGAAGCTACACATTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCGAGACTAGCGGACCCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGTTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGACACTTTAAGAGGTGCCACAGCTGAATTGCGGTTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCGATTGAATATTTGGTTGATTTGCTCCTCTCTGCTGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGTGCCATAGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCCGGAGCAATAGGGCCCCTGGTTGAATTATTAGGCAATGGAACCCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATCCCTGTTCTGGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTCTGCACTACAAGCAATAGGCATTGCAGTATGGTGCTTCAAGAAGGAGCCGTGCCACCATTGGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTGAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGACTTGCATAATTGATCCTTATTAG 2595 43.62 MHSFSFILIEYDIDAGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVLKLLRPILDAVVDSDIASDEELTQAFEDLDHSVDELRVLFENRQPLSSKVYFVLQTEALISKIGKFSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISFVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMISLVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQTTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDISRLLLSSSEDQTAKLEENGCDSVAKPSTSPSGTNVLNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGETNEATHLSTNLTGYGSDAAGESKSEPLAAATSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSVNETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRGTCIIDPY 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25450651 25456927 - CmPI595203_02g012460.1 Cmu02g1246 409295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1246 864 CDD RING-Ubox_PUB 254 306 IPR045210 -
Cmu02g1246 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 327 IPR013083 -
Cmu02g1246 864 MobiDBLite consensus disorder prediction 431 542 - -
Cmu02g1246 864 SMART arm_5 603 643 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 SMART arm_5 808 848 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 SMART arm_5 644 684 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 SMART arm_5 766 806 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 SMART arm_5 685 725 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 SMART arm_5 726 765 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 SUPERFAMILY ARM repeat 573 846 IPR016024 -
Cmu02g1246 864 SMART Ubox_2 256 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu02g1246 864 MobiDBLite consensus disorder prediction 363 403 - -
Cmu02g1246 864 MobiDBLite consensus disorder prediction 438 458 - -
Cmu02g1246 864 SUPERFAMILY RING/U-box 241 329 - -
Cmu02g1246 864 PANTHER U BOX DOMAIN-CONTAINING 46 850 - -
Cmu02g1246 864 Gene3D - 556 854 IPR011989 -
Cmu02g1246 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 656 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 Pfam Armadillo/beta-catenin-like repeat 605 642 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 Pfam Armadillo/beta-catenin-like repeat 644 683 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 Pfam Armadillo/beta-catenin-like repeat 687 724 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 696 738 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 MobiDBLite consensus disorder prediction 345 410 - -
Cmu02g1246 864 FunFam RING-type E3 ubiquitin transferase 557 852 - -
Cmu02g1246 864 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu02g1246 864 MobiDBLite consensus disorder prediction 521 535 - -
Cmu02g1246 864 Pfam U-box domain 253 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu02g1246 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 737 778 IPR000225 GO:0005515(InterPro)
Cmu02g1246 864 MobiDBLite consensus disorder prediction 465 503 - -
Cmu02g1246 864 Coils Coil 196 226 - -
Cmu02g1246 864 FunFam RING-type E3 ubiquitin transferase 252 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1675 Cmu-Chr1:30476320 Cmu02g1246 Cmu-Chr2:25450651 1.90E-33 dispersed
Cmu02g1246 Cmu-Chr2:25450651 Cmu03g0778 Cmu-Chr3:1954425 8.60E-12 dispersed
Cmu09g0750 Cmu-Chr9:7133660 Cmu02g1246 Cmu-Chr2:25450651 9.30E-74 transposed
Cmu01g1674 Cmu-Chr1:30467729 Cmu02g1246 Cmu-Chr2:25450651 1.60E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1246 - - - 0.0