Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1272 ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGGCCAATTGCCCTCAACTCCCAGTCGTCCCACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGGCGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCGGAGGCAATAAAGGCGCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTTGATGAGGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCCAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA 609 53.2 MDDIDILKSTLSPSDMSSATMFMNNNTANCPQLPVVPPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 25901469 25902077 - CmPI595203_02g012720.1 Cmu02g1272 409321
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1272 202 FunFam BHLH transcription factor 110 174 - -
Cmu02g1272 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 166 IPR036638 GO:0046983(InterPro)
Cmu02g1272 202 Gene3D - 106 173 IPR036638 GO:0046983(InterPro)
Cmu02g1272 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983(InterPro)
Cmu02g1272 202 CDD bHLH_AtIND_like 108 164 - -
Cmu02g1272 202 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 72 185 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1272 202 Pfam Helix-loop-helix DNA-binding domain 116 157 IPR011598 GO:0046983(InterPro)
Cmu02g1272 202 SMART finulus 113 162 IPR011598 GO:0046983(InterPro)
Cmu02g1272 202 Coils Coil 146 166 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1502 Cmu-Chr1:28538282 Cmu02g1272 Cmu-Chr2:25901469 3.20E-35 dispersed
Cmu02g1272 Cmu-Chr2:25901469 Cmu08g1538 Cmu-Chr8:27224156 4.80E-38 dispersed
Cmu02g1272 Cmu-Chr2:25901469 Cmu05g2059 Cmu-Chr5:30274809 1.00E-40 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5753 PF00010 HLH 7.00E-07 No_clan Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1272 - - - 0.0