Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1296 ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCAGCCGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAGCCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACAGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCATCACCACCATCAGCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTGGGAAGAGGTCAGTTTAAGAAAAATAATAATCATGATAACAAATTTAATAATAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGGCGGCGACGGTACCGGTGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCTTTGTCAGCAGCTGATAGGATTGACCATCAAAGAAGGAAGGTCAAACTGTTATCTATGCTTGATGAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTAGTAAATTCATTCGACGAGGTGATGGGGTTTGGAGCGGCGGTGCCATACACATCGTTGGCGCAAAAGGCGATGTCGAGACATTTCAGGTGTCTAAAGGACGTTATATCAGCGCAGTTGAAGCATAGTTGCGAGATGTTGGGAGAGAAAGATGGAGGAGTAAGTGGAAGGGCCTCAGGAATAACAAAGGGTGAGACTCCAAGGCTAAAGCTCTTGGAGCAAAGCCTTAGGCAGCAACGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAACATCTTACGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCTAGCGATGCTGATAAACATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAACAAGATGATGATGATGATGATAATAATACGGATGAAGACACACAAACCAACTCTCAACAAATTACCACTAATAATAATCCTCTTTCACAAACTCCAACGCCGCCTACTTCCTCCGCCGCACCACCACCCCCCTCCTCCTCCGCCGCGTCTCCACCCAAAATACCCGATCACCCTTCCCCCTTCTCCGCCGCCGCTACCCACTGCTTTCCGGCTACCCATTATGACTCAGACCTCCACGACACGTGTCGTCGCCTCACCGTTCTCCCTGCACCTGATCTTCAATTCGGGACCACAACCTCTTCTGCCACGTCTGACATCCCCGGCCCCACCACCCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCATGCCGGAAATATCCCCGATAAAACCTCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAG 1971 50.38 MSQQDYQQAAAAAAAAGFFTPFCNGYDRSSTAHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPQPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHQPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNNNHDNKFNNKSNLPSNSNSHGGGGDGTGVSSSSTKDHQPALSAADRIDHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQLKHSCEMLGEKDGGVSGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKQDDDDDDNNTDEDTQTNSQQITTNNNPLSQTPTPPTSSAAPPPPSSSAASPPKIPDHPSPFSAAATHCFPATHYDSDLHDTCRRLTVLPAPDLQFGTTTSSATSDIPGPTTLIRFGTTAGDVSLTLGLRHAGNIPDKTSSFSLRSEFGGC 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26246206 26252012 - CmPI595203_02g012960.1 Cmu02g1296 409345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1296 656 MobiDBLite consensus disorder prediction 263 313 - -
Cmu02g1296 656 Pfam Homeobox KN domain 452 491 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu02g1296 656 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 175 525 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu02g1296 656 MobiDBLite consensus disorder prediction 129 153 - -
Cmu02g1296 656 MobiDBLite consensus disorder prediction 132 148 - -
Cmu02g1296 656 MobiDBLite consensus disorder prediction 540 564 - -
Cmu02g1296 656 Pfam Associated with HOX 239 379 IPR006563 -
Cmu02g1296 656 CDD homeodomain 435 496 IPR001356 GO:0003677(InterPro)
Cmu02g1296 656 MobiDBLite consensus disorder prediction 272 305 - -
Cmu02g1296 656 SMART prehox3 233 380 IPR006563 -
Cmu02g1296 656 MobiDBLite consensus disorder prediction 504 518 - -
Cmu02g1296 656 SUPERFAMILY Homeodomain-like 436 502 IPR009057 -
Cmu02g1296 656 ProSiteProfiles 'Homeobox' domain profile. 432 495 IPR001356 GO:0003677(InterPro)
Cmu02g1296 656 SMART HOX_1 435 499 IPR001356 GO:0003677(InterPro)
Cmu02g1296 656 FunFam BEL1-like homeodomain protein 4 438 500 - -
Cmu02g1296 656 MobiDBLite consensus disorder prediction 56 77 - -
Cmu02g1296 656 MobiDBLite consensus disorder prediction 519 539 - -
Cmu02g1296 656 MobiDBLite consensus disorder prediction 503 567 - -
Cmu02g1296 656 Gene3D - 438 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0234 Cmu-Chr1:2316473 Cmu02g1296 Cmu-Chr2:26246206 8.20E-78 dispersed
Cmu01g1578 Cmu-Chr1:29413807 Cmu02g1296 Cmu-Chr2:26246206 4.50E-128 dispersed
Cmu02g1296 Cmu-Chr2:26246206 Cmu11g0411 Cmu-Chr11:4532079 3.30E-72 dispersed
Cmu02g1296 Cmu-Chr2:26246206 Cmu02g2226 Cmu-Chr2:35851762 2.00E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5756 PF07526 POX 7.10E-52 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1296 - - - 0.0