Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1329 ATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCACCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCGGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCTCCTATGTTAGCCATTCCCCCTTCCGCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCCGCGGCTGTAGCTGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCAACAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCCCATTCCCATTCACATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCTTGATCAACCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA 957 45.77 MSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPPTPTPSSSALLPYNISPMLAIPPSAAPGSSQQMLIPPQHQMQQQQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHQQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQLDQPQHPHPHQSHKPETTPADDGRNNNINIGPSC 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26716473 26717429 + CmPI595203_02g013290.1 Cmu02g1329 409378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1329 318 Coils Coil 86 106 - -
Cmu02g1329 318 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cmu02g1329 318 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cmu02g1329 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 201 - -
Cmu02g1329 318 MobiDBLite consensus disorder prediction 253 272 - -
Cmu02g1329 318 MobiDBLite consensus disorder prediction 283 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1329 Cmu-Chr2:26716473 Cmu11g1129 Cmu-Chr11:21248884 2.80E-45 dispersed
Cmu02g1329 Cmu-Chr2:26716473 Cmu10g2152 Cmu-Chr10:27552403 3.00E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5763 PF03195 LOB 2.50E-41 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1329 - - - 0.0