Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1369 ATGGGATGGTTTCTCTGTTCTGGAAGTTCGAATAAGAAGGAAAAACATCAGCAGCGGCAGGTTCAGAAGAAGGACGATGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAACCGACATTTAATGGGAAGAACGAGGCTCTGAAAGATGGAGGTTCTGATCAAATTGCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTGGGTGAAGGAGGTTTTGGTCAAGTTTATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCACCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAAAGACTCCTGGTTTATGAATACATGCCATTGGGATCGTTGGAAGACCATTTACATGATCTCCCACCTGATAAAAGACGACTTGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAGATTACCATCCTAAGCTTTCCGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACATATGGATACTGTGCTCCTGAGTATGCAATGACAGGCCAGCTCACTTTAAAATCAGACGTTTATAGCTTTGGAGTTGTTCTACTCGAAATTATTACTGGGAGAAAAGCTATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCTCAACCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCCGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCTGATGTTGTCACAGCCCTTTCATATCTTGCTTCCCAAAAATACAACCCCGAAACTCAGCCAGTTCAAAGCGCTCGCACTGTGATAGTGTTCTTTTTGCAGTTCAACAATCGTAGAAACGAGAAATCGAATTTTGAATTTTGGAGGAGGATCAGCAGGGCCACATTAACCAAAGGAAAGATCACTGTGTTTTGCTATCTTCTTCTTCCTCGCTCTGCTCCGCCTGTCGCCGCCCTAAAATCGCGAACCATAATGGACCGATTGACTTCGAATTTGCTTGATGAAGCTATAGGTTTTGATGATCCCACTAAGCCCTCCCCTCTGATCGGCCGTCTGTTGCTCGTCGAGGATTGCGTTGAAACAAGCGGTGCTTTTGTTCTTCATCACCTTCTCAAGCGCGCCTTTTCTTCTCGTCACTCGTCCAATGCCGTCATCTTCATTGCATTCTCTCAGTCCTTCGTCCATTACGACCGCGTGCTCAGGAAACTGGGGTGTAATTTAGCTGCTCAAAGGGACAGCGGTAGGTTCGTATTCTTTGACATGCTTACGCTGGGCTGTTCAGATAGAAGTGGAAAGGAAACTGATGAAGGTGTTCTTGTTGGGCTGTACTGCAAAATTCAAAGAGCTGTTAATGCTTTAATTCAAGAGAACAAAAGGCATGTCACCATTGTGATTGATGATATACCTCTTTTGGAGGTTGCTGCCAATGGTTCTATAAATCATGTCTTAGACTTCCTTCATTATTGCCACACTTTAACATCAGAAATTGGTTGTTCCATAATTGCACTTAATCACGAAGATGTTTACGTGGACATCGAAAGGCCACTGATTCTACAGATGGAACACCTTGCTGACGTTTTGATAAAAGTAGGACCACTAGCCACAGGTATAGCAAAGGACGTTCATGGGCAGCTGACAGTTTTGAACAAGCCAGTTGGAGGTCTGCAAGACAAGTTGAGAAACAGAGTGCATAATTTTCACTTTTACATCAAGGAAAATGGTACCGAATTTTTTTATTCTGGAAGCAGAGCTTGA 2064 43.36 MGWFLCSGSSNKKEKHQQRQVQKKDDDPIPSTSEKLMVKPTFNGKNEALKDGGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKRRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALSYLASQKYNPETQPVQSARTVIVFFLQFNNRRNEKSNFEFWRRISRATLTKGKITVFCYLLLPRSAPPVAALKSRTIMDRLTSNLLDEAIGFDDPTKPSPLIGRLLLVEDCVETSGAFVLHHLLKRAFSSRHSSNAVIFIAFSQSFVHYDRVLRKLGCNLAAQRDSGRFVFFDMLTLGCSDRSGKETDEGVLVGLYCKIQRAVNALIQENKRHVTIVIDDIPLLEVAANGSINHVLDFLHYCHTLTSEIGCSIIALNHEDVYVDIERPLILQMEHLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDKLRNRVHNFHFYIKENGTEFFYSGSRA 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27264732 27276370 + CmPI595203_02g013690.1 Cmu02g1369 409418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1369 687 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Cmu02g1369 687 Pfam Elongation complex protein 6 452 674 IPR018627 GO:0002098(InterPro)|GO:0033588(InterPro)
Cmu02g1369 687 Gene3D Transferase(Phosphotransferase) domain 1 153 374 - -
Cmu02g1369 687 PANTHER OS07G0668900 PROTEIN 14 368 - -
Cmu02g1369 687 FunFam Serine/threonine-protein kinase PBS1 153 368 - -
Cmu02g1369 687 CDD STKc_IRAK 82 350 - -
Cmu02g1369 687 SUPERFAMILY Protein kinase-like (PK-like) 64 374 IPR011009 -
Cmu02g1369 687 FunFam Serine/threonine-protein kinase PBS1 47 152 - -
Cmu02g1369 687 CDD Elp6 454 682 - -
Cmu02g1369 687 Gene3D - 446 683 IPR027417 -
Cmu02g1369 687 MobiDBLite consensus disorder prediction 1 35 - -
Cmu02g1369 687 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
Cmu02g1369 687 SMART serkin_6 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1369 687 Pfam Protein tyrosine and serine/threonine kinase 80 296 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1369 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1369 687 MobiDBLite consensus disorder prediction 12 32 - -
Cmu02g1369 687 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1369 Cmu-Chr2:27264732 Cmu05g0647 Cmu-Chr5:5533543 5.70E-160 dispersed
Cmu10g2786 Cmu-Chr10:34455541 Cmu02g1369 Cmu-Chr2:27264732 2.40E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75307 PF07714 PK_Tyr_Ser-Thr 8.60E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1369 - - - 0.0