Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1374 ATGATGTTGGATCTCAACGATTCGATTATGAACCGTGACGAAACGACGGCGGAGCGGATCGTAATGGAAGATTCAGAGACTTCAAATTCCTCCGTTGTTAATGCTGCCGACGAGGTTTCCAATAGCAGAGATGAGGATTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAGTTCCGGCGGCGGCAGCGGCGGCGGCGCGTCCTCGGAATTGGTGACTCAGACACTTTTTCCGGTGGTTGGAGGATGGGGGGATTCTGGGTCTTCAGTGCCCAGAACCCATTGGTTGAACTTGTCGTCGACGGCGGATTCCGGCGGCGGCGGTGGACAGCCGGAGTTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGCTCCCGGAGCTCGCAGTACCGAGGAGTTACCTTTTATCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCAGCAATAAAGTTTAGAGGAGTCGATGCAGACATAAACTTCAACATAAGTGATTACGATGAAGATATGAAACACATGAAGAATCTAAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAACTAAGAGGACTTTCTCTTCAAAAATATGGAAGATGGGAAAATCAAATGAGCCAAATTATTGGGAAGAATGGAATTGAGCAGAGGTCTTACAAAGGGGAAACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTCCTCAAAAACTCAACATTGAGAGACCAAAGAATGAAAACAATGGTTATGCATGTGGTGTGGCTGGCCAACAACCTCATATTCCTCCTTCTATGTGGTCTAGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGAAAGAGAGAGAGAAAAGAGAAACGACTCAACGAAGAGCCCTACAAGTTGGGGATGGCAAATGCCAACGTCGACGTCGATGTCTATATCAATGCCAATGCAAATTCAAGGAAATATGAGTGGAAAAAGCAATTACAAGAATAATAATAACAATAACAATAATAATAATATGAGTAGTAATGGAATAATAGCAAGAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCCCAAAACAACACTGCCCTCCACAGTACTCACTGCCCCAATATTTCTTGA 1323 44.44 MMLDLNDSIMNRDETTAERIVMEDSETSNSSVVNAADEVSNSRDEDSSVLIFDILKRESSGGGSGGGASSELVTQTLFPVVGGWGDSGSSVPRTHWLNLSSTADSGGGGGQPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKHMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWENQMSQIIGKNGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHFSNSPQKLNIERPKNENNGYACGVAGQQPHIPPSMWSSFYSGFLADNEEREREKRNDSTKSPTSWGWQMPTSTSMSISMPMQIQGNMSGKSNYKNNNNNNNNNNMSSNGIIAREEAHVSKIAASSGFSSSSNFGSLYAQNNTALHSTHCPNIS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27377319 27381087 + CmPI595203_02g013740.1 Cmu02g1374 409423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1374 440 MobiDBLite consensus disorder prediction 334 356 - -
Cmu02g1374 440 MobiDBLite consensus disorder prediction 370 394 - -
Cmu02g1374 440 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677(InterPro)
Cmu02g1374 440 CDD AP2 137 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1374 440 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1374 440 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1374 440 Pfam AP2 domain 137 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1374 440 MobiDBLite consensus disorder prediction 14 40 - -
Cmu02g1374 440 SMART rav1_2 137 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1374 440 MobiDBLite consensus disorder prediction 22 38 - -
Cmu02g1374 440 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 260 - -
Cmu02g1374 440 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1374 Cmu-Chr2:27377319 Cmu02g2070 Cmu-Chr2:34359105 7.90E-70 dispersed
Cmu10g2781 Cmu-Chr10:34420501 Cmu02g1374 Cmu-Chr2:27377319 1.80E-67 wgd
Cmu02g1374 Cmu-Chr2:27377319 Cmu04g0914 Cmu-Chr4:23629755 5.90E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5765 PF00847 AP2 6.10E-10 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1374 K09284 - csv:101204131 709.909