Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1376 ATGACGAGCCTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACAACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGACTTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTAACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 1701 45.09 MTSLRFLFSNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERLGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIARQIQKFLLFPSSSSSSSSSSSSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27393942 27407579 + CmPI595203_02g013760.1 Cmu02g1376 409425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1376 566 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 363 - -
Cmu02g1376 566 Gene3D Histone, subunit A 416 544 IPR009072 GO:0046982(InterPro)
Cmu02g1376 566 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 20 311 IPR036038 GO:0003824(InterPro)
Cmu02g1376 566 Gene3D - 171 367 IPR043132 -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 376 394 - -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 376 422 - -
Cmu02g1376 566 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 426 490 IPR003958 -
Cmu02g1376 566 SUPERFAMILY Histone-fold 423 524 IPR009072 GO:0046982(InterPro)
Cmu02g1376 566 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cmu02g1376 566 Gene3D - 30 104 IPR043131 -
Cmu02g1376 566 PRINTS CCAAT-binding transcription factor subunit A signature 473 491 - -
Cmu02g1376 566 PRINTS CCAAT-binding transcription factor subunit A signature 492 510 - -
Cmu02g1376 566 PRINTS CCAAT-binding transcription factor subunit A signature 454 472 - -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 406 420 - -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 513 539 - -
Cmu02g1376 566 ProSitePatterns NF-YB/HAP3 subunit signature. 457 473 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1376 566 FunFam Nuclear factor Y, subunit B1 416 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0921 Cmu-Chr2:12303494 Cmu02g1376 Cmu-Chr2:27393942 3.20E-42 transposed
Cmu03g2288 Cmu-Chr3:31575913 Cmu02g1376 Cmu-Chr2:27393942 1.80E-25 transposed
Cmu07g0930 Cmu-Chr7:23476652 Cmu02g1376 Cmu-Chr2:27393942 5.70E-40 transposed
Cmu09g0586 Cmu-Chr9:5362615 Cmu02g1376 Cmu-Chr2:27393942 5.10E-35 transposed
Cmu10g1240 Cmu-Chr10:5304306 Cmu02g1376 Cmu-Chr2:27393942 1.40E-41 transposed
Cmu10g1258 Cmu-Chr10:5472870 Cmu02g1376 Cmu-Chr2:27393942 2.10E-31 transposed
Cmu10g2778 Cmu-Chr10:34378623 Cmu02g1376 Cmu-Chr2:27393942 1.70E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5766 PF01063 Aminotran_4 9.00E-15 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1376 - - - 0.0