Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1376 ATGACGAGCCTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACAACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGACTTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTAACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 1701 45.09 MTSLRFLFSNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERLGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIARQIQKFLLFPSSSSSSSSSSSSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27393942 27407579 + CmPI595203_02g013760.1 Cmu02g1376 409425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1376 566 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 363 - -
Cmu02g1376 566 Gene3D Histone, subunit A 416 544 IPR009072 GO:0046982(InterPro)
Cmu02g1376 566 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 20 311 IPR036038 GO:0003824(InterPro)
Cmu02g1376 566 Gene3D - 171 367 IPR043132 -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 376 394 - -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 376 422 - -
Cmu02g1376 566 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 426 490 IPR003958 -
Cmu02g1376 566 SUPERFAMILY Histone-fold 423 524 IPR009072 GO:0046982(InterPro)
Cmu02g1376 566 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cmu02g1376 566 Gene3D - 30 104 IPR043131 -
Cmu02g1376 566 PRINTS CCAAT-binding transcription factor subunit A signature 473 491 - -
Cmu02g1376 566 PRINTS CCAAT-binding transcription factor subunit A signature 492 510 - -
Cmu02g1376 566 PRINTS CCAAT-binding transcription factor subunit A signature 454 472 - -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 406 420 - -
Cmu02g1376 566 MobiDBLite consensus disorder prediction 513 539 - -
Cmu02g1376 566 ProSitePatterns NF-YB/HAP3 subunit signature. 457 473 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1376 566 FunFam Nuclear factor Y, subunit B1 416 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1376 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0921 Cmu-Chr2:12303494 Cmu02g1376 Cmu-Chr2:27393942 3.20E-42 transposed
Cmu03g2288 Cmu-Chr3:31575913 Cmu02g1376 Cmu-Chr2:27393942 1.80E-25 transposed
Cmu07g0930 Cmu-Chr7:23476652 Cmu02g1376 Cmu-Chr2:27393942 5.70E-40 transposed
Cmu09g0586 Cmu-Chr9:5362615 Cmu02g1376 Cmu-Chr2:27393942 5.10E-35 transposed
Cmu10g1240 Cmu-Chr10:5304306 Cmu02g1376 Cmu-Chr2:27393942 1.40E-41 transposed
Cmu10g1258 Cmu-Chr10:5472870 Cmu02g1376 Cmu-Chr2:27393942 2.10E-31 transposed
Cmu10g2778 Cmu-Chr10:34378623 Cmu02g1376 Cmu-Chr2:27393942 1.70E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g332 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01361 Cam02g1439 Cec02g1460 Cco02g1497 Clacu02g1419 Cmu02g1376 Cre02g1703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g1258 . 12 148 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.6 2.0e-48 189.5
Cmu02g0921 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.2e-38 154.5
Cmu10g1258 . 8 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cmu07g0930 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cmu02g0921 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cmu10g1240 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.4e-50 194.5
Cmu07g0930 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.9e-47 184.1
Cmu02g1376 . 408 526 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.8e-43 172.6
Cmu09g0586 . 45 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cmu02g1376 . 395 511 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 6.0e-49 190.7
Cmu02g0921 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cmu07g0930 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cmu10g1240 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.5e-41 164.9
Cmu09g0586 . 41 136 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.8e-38 155.2
Cmu09g0586 . 43 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cmu02g0921 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.9e-39 157.5
Cmu10g1240 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.9e-39 157.5
Cmu07g0930 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.0e-38 154.5
Cmu02g1376 . 401 560 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 3.7e-55 211.5
Cmu10g2778 . 74 206 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 3.0e-49 191.8
Cmu02g0921 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cmu07g0930 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.0e-41 164.9
Cmu10g1240 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.6e-40 162.2
Cmu09g0586 . 44 146 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.7e-37 150.6
Cmu07g0930 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cmu02g0921 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cmu10g1240 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.4e-41 164.1
Cmu02g1376 . 421 515 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cmu09g0586 . 45 145 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.6e-39 158.3
Cmu02g0921 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.2e-52 201.4
Cmu10g1240 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 2.0e-49 192.6
Cmu07g0930 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.5e-45 177.2
Cmu02g1376 . 421 531 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.8e-42 169.5
Cmu09g0586 . 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cmu02g1376 . 406 559 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 3.8e-55 211.5
Cmu10g2778 . 74 206 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.6 6.4e-47 184.1
Cmu02g0921 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cmu10g1240 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.3e-41 164.5
Cmu07g0930 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.9e-41 164.1
Cmu09g0586 . 44 146 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006362 1 6 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5766 PF01063 Aminotran_4 9.00E-15 No_clan Cmu TF