Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1382 ATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCCCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTTTATGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCTAACATGCAGCAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA 546 52.75 MSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27498237 27499435 + CmPI595203_02g013820.1 Cmu02g1382 409431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1382 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 139 - -
Cmu02g1382 181 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
Cmu02g1382 181 Coils Coil 109 143 - -
Cmu02g1382 181 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Cmu02g1382 181 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1382 Cmu-Chr2:27498237 Cmu03g0858 Cmu-Chr3:3099391 2.20E-50 dispersed
Cmu02g1382 Cmu-Chr2:27498237 Cmu02g2081 Cmu-Chr2:34495487 4.40E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5767 PF03195 LOB 1.30E-40 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1382 - - - 0.0