Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1408 ATGTCAAATTCCGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCTGATGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCTGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGGTTCTGGACGGCGGGAAGATGACCCTCGCTAA 774 56.33 MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGSGRREDDPR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27798216 27798989 + CmPI595203_02g014080.1 Cmu02g1408 409457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1408 257 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Cmu02g1408 257 MobiDBLite consensus disorder prediction 20 51 - -
Cmu02g1408 257 MobiDBLite consensus disorder prediction 36 51 - -
Cmu02g1408 257 Pfam TCP family transcription factor 39 121 IPR017887 -
Cmu02g1408 257 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 153 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Cmu02g1408 257 MobiDBLite consensus disorder prediction 112 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1408 K16221 - - csv:101206050 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0791 Cmu-Chr1:9018250 Cmu02g1408 Cmu-Chr2:27798216 2.60E-76 dispersed
Cmu02g1408 Cmu-Chr2:27798216 Cmu11g1349 Cmu-Chr11:25694987 3.90E-29 dispersed
Cmu02g1408 Cmu-Chr2:27798216 Cmu06g1677 Cmu-Chr6:27850054 5.10E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0791 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cmu02g1408 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cmu06g0017 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cmu05g2494 . 64 158 TCP Transcription Factor Family AT3G47620 89.7 8.6e-41 165.2
Cmu04g1279 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cmu11g1349 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cmu11g1349 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cmu05g1438 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cmu02g1408 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cmu01g0791 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.7e-63 237.3
Cmu11g1349 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.4e-42 170.6
Cmu07g1621 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5768 PF03634 TCP 3.50E-33 No_clan Cmu TF