Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1446 ATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTCCATGGGAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCGATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTCGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCAGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTTGAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGAACAGCTTATATTGCACCATCATCTCGGGTGTTTGGAAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGGCGGTACTTCATCATTGACTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTGTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTGGCTTCAGAGTTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTATTGCCCCTATTTGCAGGAAAGATTTCTTGTATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCGCACCTACTGATGGAAATGAACAGTTCGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCTTCCAAGAATTTTATCGCTAAATACTGTTACTGTCTGTGGTGGGGACTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTACCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGATTGCTGCCGCAGGATCTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAAACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCTTGTTTGTTTACGGAGTACACTTACATAGTGCGTGAGGGTGATCCAGTTGATGAGATGCTTTTCATTATCCGTGGTCGGCTTGAGAGTGTGACTACAGATGGCGGGCGGAGTGGATTTTTCAACCGTTCCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTTTGGATCCGAAATCTGGTTCAAATCTTCCATCTTCTACAAGGACGGTGAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCGCAGCAATGGAGGACCTGGGCTGCCTGCTTCATCCAAGCGGCATGGCGCCGATATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCATACTGCCACAAGTGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGGGTTCAGCGATACCGGAATGCAAAGAGCGCTCAGGAATTAATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2175 43.86 MGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQSLNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLVIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCIAPICRKDFLYCGNQDMEGYATWNQTGVDGLKSSCAPTDGNEQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSHTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28208200 28221082 + CmPI595203_02g014460.1 Cmu02g1446 409495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1446 724 SMART cnmp_10 495 626 IPR000595 -
Cmu02g1446 724 Gene3D - 100 420 - -
Cmu02g1446 724 Pfam Cyclic nucleotide-binding domain 520 605 IPR000595 -
Cmu02g1446 724 CDD CAP_ED 495 626 IPR000595 -
Cmu02g1446 724 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 73 712 - -
Cmu02g1446 724 Pfam Ion transport protein 102 421 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu02g1446 724 SUPERFAMILY Voltage-gated potassium channels 91 417 - -
Cmu02g1446 724 ProSiteProfiles IQ motif profile. 631 660 - -
Cmu02g1446 724 ProSiteProfiles cAMP/cGMP binding motif profile. 495 579 IPR000595 -
Cmu02g1446 724 Gene3D Helix hairpin bin 423 486 - -
Cmu02g1446 724 FunFam Cyclic nucleotide-gated ion channel 1 422 486 - -
Cmu02g1446 724 FunFam Cyclic nucleotide-gated ion channel 1 493 611 - -
Cmu02g1446 724 Gene3D Jelly Rolls 493 613 IPR014710 -
Cmu02g1446 724 PRINTS EAG/ELK/ERG potassium channel family signature 144 154 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu02g1446 724 PRINTS EAG/ELK/ERG potassium channel family signature 390 401 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu02g1446 724 PRINTS EAG/ELK/ERG potassium channel family signature 155 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu02g1446 724 PRINTS EAG/ELK/ERG potassium channel family signature 458 465 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu02g1446 724 PRINTS EAG/ELK/ERG potassium channel family signature 408 417 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu02g1446 724 PRINTS EAG/ELK/ERG potassium channel family signature 272 282 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu02g1446 724 SUPERFAMILY cAMP-binding domain-like 424 615 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1446 Cmu-Chr2:28208200 Cmu10g2225 Cmu-Chr10:28377738 1.10E-299 dispersed
Cmu02g1446 Cmu-Chr2:28208200 Cmu01g0049 Cmu-Chr1:422307 1.00E-207 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1446 K05391 - csv:101219180 1355.89