Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1487 ATGGATGAGTTTTACAGGCTTAGCAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTGGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGTATTCATGAAGCTTTAATGGTGGATAATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTATATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCTCCTAGGTCTTCTATTGAGTTGGGAGCTGATCCCCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGTGACGTCGGATTCTCGCTCAGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACCGAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACGCAAAAAACGAACCAAGACCTGAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCGAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCTGAAGATATGCGATTCGTTCTCATGGACGGGGCGGGGGCCGGGGCCGGAGCCGGGGAATGCATTAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAGGCCATAGTGAGGGTGATTACCGTGAGTATGATTTGAGGGCGGATTCAACCGAAGTTGATCGCGTATGCAAGGTGATCGACGAATTGTTTGCGTTAGATAGAAACATGGAGGCAGTTCTTGATGAGTGTGGTATAAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGTTTTGCCCATGACTCCAAAACTTACAATATGATGATGACAATTTTGGGGAAGACAAGACAGTTTGAAACAATGGTGTCATTGCTTGAAGAAATGGCTGAAAAAGAGCTTTTGACAATGGAAACTTTCACCATTTGTTTCAAAGCATTTGCAGCTGCAAAAGAGAGGAAGAAAGCTGTTGGGGTCTTTGAGTTGATGAAGAAGTACAAGTATAAAGTGGGTGTAGAAACTATAAACTGCTTGCTTGATAGTTTAGGGAGGGAAAAGCTTGGTAAAGAGGCTCAAGCAGTTTTTGAGAAGTTACATGGTAGGTTTACGCCGAATTTGCAAACATACACAGTTTTGTTGAACGGTTGGTGTCGGGTGAGGAATCTAATGGAAGCTGGGAAGATATGGAATCTGATGATTGATGAAGGTTTTAAGCCTGATATTGTTGCTCACAATACCATGCTTGAAGGCTTGTTGAGGTGTAAGAAGAGGTCAGATGCTATCAAGTTGTTTGAGGTTATGAAAGCCAAGGGCCCATCTCCTGATGTCAAAAGCTACACGATTTTGGTTCGGGATTTCTGTAAGCAAACCAAGATGAAAGAAGCGGTTGAGTATTTTGAAGAAATGCAGGGAGCGGGATGTCGGCCTGATGCTGGAATCTACACATGTTTGATCACAGGGTTTGGGAATCAGAAAAGGATGGACATGGTTTATGGGCTGCTGAAAGAGATGAAGACAAAAGATTGCCCGCCTGATGGGAAGACCTACAATGCTCTAATCAAATTGATGACGAATAAGCGAATGCCCGATGATGCTGTTCGGATATACAAGAAGATGATTGAGAATGGCATTGAACCAACAATCCACACCTACAACATGATGATGAAGTCCTACTTTCAGACAAGGAATTACGACATGGGTGTTGCTGTTTGGGATGAGATGAAGCAAAAGGGGTGTTGCCCTGACTATAACTCGTATACCGTCTTTATCGGGGGGCTCATAAGTCAGGGACGTTGCAGCGAAGCGGGAAAGTATCTAGAGGAGATGATTGAGAAAGGAATGAAGGCTCCTCAGCTTGATTACAACAAATTTGCTGCTGATTTCTCTAGAGCTGGGAGACCTGATATTCTTGAAGAATTGGCTCAAAAGATGAAGTTTTCTGGCAAATTTGAAGCCTCCAATGTAATTGCAAGATGGGCTGAGATGATGAGGAAGAGGGTGAAGAGAAGAAATCCTACAAACATTATCAATGGTTACCAAAGCACTTAA 2451 43.29 MDEFYRLSNSVIASYSNGVVGGEAIASTSCGGIHEALMVDNDMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTVTSDSRSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTQKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGAGAGAGECIKGSNFYDNGETGGHSEGDYREYDLRADSTEVDRVCKVIDELFALDRNMEAVLDECGIKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSKTYNMMMTILGKTRQFETMVSLLEEMAEKELLTMETFTICFKAFAAAKERKKAVGVFELMKKYKYKVGVETINCLLDSLGREKLGKEAQAVFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNLMIDEGFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQTKMKEAVEYFEEMQGAGCRPDAGIYTCLITGFGNQKRMDMVYGLLKEMKTKDCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIEPTIHTYNMMMKSYFQTRNYDMGVAVWDEMKQKGCCPDYNSYTVFIGGLISQGRCSEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPDILEELAQKMKFSGKFEASNVIARWAEMMRKRVKRRNPTNIINGYQST 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28630265 28638493 + CmPI595203_02g014870.1 Cmu02g1487 409536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1487 816 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 396 499 - GO:0005739(PANTHER)|GO:0140053(PANTHER)
Cmu02g1487 816 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu02g1487 816 SMART KNOX1_2 58 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cmu02g1487 816 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Cmu02g1487 816 Pfam PPR repeat family 540 589 IPR002885 -
Cmu02g1487 816 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Cmu02g1487 816 Gene3D - 222 293 - -
Cmu02g1487 816 CDD homeodomain 236 287 IPR001356 GO:0003677(InterPro)
Cmu02g1487 816 Gene3D Tetratricopeptide repeat domain 569 637 IPR011990 GO:0005515(InterPro)
Cmu02g1487 816 Gene3D Tetratricopeptide repeat domain 501 568 IPR011990 GO:0005515(InterPro)
Cmu02g1487 816 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Cmu02g1487 816 Gene3D Tetratricopeptide repeat domain 352 500 IPR011990 GO:0005515(InterPro)
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Cmu02g1487 816 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu02g1487 816 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu02g1487 816 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Cmu02g1487 816 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu02g1487 816 Pfam Pentatricopeptide repeat domain 634 692 IPR002885 -
Cmu02g1487 816 MobiDBLite consensus disorder prediction 166 195 - -
Cmu02g1487 816 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Cmu02g1487 816 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Cmu02g1487 816 Pfam PPR repeat 719 747 IPR002885 -
Cmu02g1487 816 Pfam PPR repeat 509 538 IPR002885 -
Cmu02g1487 816 Pfam PPR repeat 476 500 IPR002885 -
Cmu02g1487 816 Pfam PPR repeat 406 433 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 683 716 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 543 577 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 509 542 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 614 646 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 406 433 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 649 681 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 719 749 IPR002885 -
Cmu02g1487 816 NCBIfam pentatricopeptide repeat 579 612 IPR002885 -
Cmu02g1487 816 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Cmu02g1487 816 SUPERFAMILY HCP-like 554 758 - -
Cmu02g1487 816 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu02g1487 816 Gene3D Tetratricopeptide repeat domain 638 812 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1487 Cmu-Chr2:28630265 Cmu05g1806 Cmu-Chr5:28165876 9.20E-64 dispersed
Cmu02g1487 Cmu-Chr2:28630265 Cmu05g2599 Cmu-Chr5:34673380 3.50E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5772 PF13812 PPR_3 1.20E-12 CL0020 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1487 - - - 0.0