Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g1487 | ATGGATGAGTTTTACAGGCTTAGCAACTCTGTTATAGCCTCATATTCTAATGGTGTTGTGGGAGGTGAAGCCATTGCAAGCACCAGCTGTGGAGGTATTCATGAAGCTTTAATGGTGGATAATGATATGCTTCAGCTTGAAGCTGAGGCCACCACTGGTTTGAACATGTCTGACATGATCAAAACTCAAATTGTCAACCATCCCCTTTATCCCAAGCTGGTTTCTGCTTATATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCACCCTCCTAGGTCTTCTATTGAGTTGGGAGCTGATCCCCAACTGGACAACTTCATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAACCATTTGATGAAGCAACAATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGTGACGTCGGATTCTCGCTCAGCCATGAATGACGAAGTAGCCGGGACTCCGGAGGAAGAACCGAGCAGCTATGGGGAGGTGGAAATGCCGGGAAATCACGAGTCGTTCTGCACGCAAAAAACGAACCAAGACCTGAAAGAAATGCTGCTGAAGAAATACAGTGGCTATCTCAGCAGTTTGAAAAAGGAATTCTTGAAGAAAAGAAAGAAGGAGAAGCTGCCAAAAGATGCAAGAATGGCTCTATTTGACTGGTGGAATACTCATTACAAATGGCCTTATCCTACAGAAGAGGAAAAATCGAAACTATCTGTTGTTACTGGTCTAGACCAAAAGCAAATCAATAACTGGTTCATAAACCAGAGAAAGCGACATTGGAAGCCGCCTGAAGATATGCGATTCGTTCTCATGGACGGGGCGGGGGCCGGGGCCGGAGCCGGGGAATGCATTAAAGGATCAAATTTTTATGACAATGGAGAAACTGGAGGCCATAGTGAGGGTGATTACCGTGAGTATGATTTGAGGGCGGATTCAACCGAAGTTGATCGCGTATGCAAGGTGATCGACGAATTGTTTGCGTTAGATAGAAACATGGAGGCAGTTCTTGATGAGTGTGGTATAAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGTTTTGCCCATGACTCCAAAACTTACAATATGATGATGACAATTTTGGGGAAGACAAGACAGTTTGAAACAATGGTGTCATTGCTTGAAGAAATGGCTGAAAAAGAGCTTTTGACAATGGAAACTTTCACCATTTGTTTCAAAGCATTTGCAGCTGCAAAAGAGAGGAAGAAAGCTGTTGGGGTCTTTGAGTTGATGAAGAAGTACAAGTATAAAGTGGGTGTAGAAACTATAAACTGCTTGCTTGATAGTTTAGGGAGGGAAAAGCTTGGTAAAGAGGCTCAAGCAGTTTTTGAGAAGTTACATGGTAGGTTTACGCCGAATTTGCAAACATACACAGTTTTGTTGAACGGTTGGTGTCGGGTGAGGAATCTAATGGAAGCTGGGAAGATATGGAATCTGATGATTGATGAAGGTTTTAAGCCTGATATTGTTGCTCACAATACCATGCTTGAAGGCTTGTTGAGGTGTAAGAAGAGGTCAGATGCTATCAAGTTGTTTGAGGTTATGAAAGCCAAGGGCCCATCTCCTGATGTCAAAAGCTACACGATTTTGGTTCGGGATTTCTGTAAGCAAACCAAGATGAAAGAAGCGGTTGAGTATTTTGAAGAAATGCAGGGAGCGGGATGTCGGCCTGATGCTGGAATCTACACATGTTTGATCACAGGGTTTGGGAATCAGAAAAGGATGGACATGGTTTATGGGCTGCTGAAAGAGATGAAGACAAAAGATTGCCCGCCTGATGGGAAGACCTACAATGCTCTAATCAAATTGATGACGAATAAGCGAATGCCCGATGATGCTGTTCGGATATACAAGAAGATGATTGAGAATGGCATTGAACCAACAATCCACACCTACAACATGATGATGAAGTCCTACTTTCAGACAAGGAATTACGACATGGGTGTTGCTGTTTGGGATGAGATGAAGCAAAAGGGGTGTTGCCCTGACTATAACTCGTATACCGTCTTTATCGGGGGGCTCATAAGTCAGGGACGTTGCAGCGAAGCGGGAAAGTATCTAGAGGAGATGATTGAGAAAGGAATGAAGGCTCCTCAGCTTGATTACAACAAATTTGCTGCTGATTTCTCTAGAGCTGGGAGACCTGATATTCTTGAAGAATTGGCTCAAAAGATGAAGTTTTCTGGCAAATTTGAAGCCTCCAATGTAATTGCAAGATGGGCTGAGATGATGAGGAAGAGGGTGAAGAGAAGAAATCCTACAAACATTATCAATGGTTACCAAAGCACTTAA | 2451 | 43.29 | MDEFYRLSNSVIASYSNGVVGGEAIASTSCGGIHEALMVDNDMLQLEAEATTGLNMSDMIKTQIVNHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPPRSSIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATMFLTNIELELSNLCKGSFTVTSDSRSAMNDEVAGTPEEEPSSYGEVEMPGNHESFCTQKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRHWKPPEDMRFVLMDGAGAGAGAGECIKGSNFYDNGETGGHSEGDYREYDLRADSTEVDRVCKVIDELFALDRNMEAVLDECGIKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSKTYNMMMTILGKTRQFETMVSLLEEMAEKELLTMETFTICFKAFAAAKERKKAVGVFELMKKYKYKVGVETINCLLDSLGREKLGKEAQAVFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNLMIDEGFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQTKMKEAVEYFEEMQGAGCRPDAGIYTCLITGFGNQKRMDMVYGLLKEMKTKDCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIEPTIHTYNMMMKSYFQTRNYDMGVAVWDEMKQKGCCPDYNSYTVFIGGLISQGRCSEAGKYLEEMIEKGMKAPQLDYNKFAADFSRAGRPDILEELAQKMKFSGKFEASNVIARWAEMMRKRVKRRNPTNIINGYQST | 816 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28630265 | 28638493 | + | CmPI595203_02g014870.1 | Cmu02g1487 | 409536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g1487 | 816 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 396 | 499 | - | GO:0005739(PANTHER)|GO:0140053(PANTHER) | |
Cmu02g1487 | 816 | ProSitePatterns | 'Homeobox' domain signature. | 262 | 285 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cmu02g1487 | 816 | SMART | KNOX1_2 | 58 | 102 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 646 | 680 | IPR002885 | - | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 576 | 610 | IPR002885 | - | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - | |
Cmu02g1487 | 816 | SUPERFAMILY | Homeodomain-like | 226 | 296 | IPR009057 | - | |
Cmu02g1487 | 816 | Pfam | PPR repeat family | 540 | 589 | IPR002885 | - | |
Cmu02g1487 | 816 | ProSiteProfiles | 'Homeobox' domain profile. | 224 | 287 | IPR001356 | GO:0003677(InterPro) | |
Cmu02g1487 | 816 | Gene3D | - | 222 | 293 | - | - | |
Cmu02g1487 | 816 | CDD | homeodomain | 236 | 287 | IPR001356 | GO:0003677(InterPro) | |
Cmu02g1487 | 816 | Gene3D | Tetratricopeptide repeat domain | 569 | 637 | IPR011990 | GO:0005515(InterPro) | |
Cmu02g1487 | 816 | Gene3D | Tetratricopeptide repeat domain | 501 | 568 | IPR011990 | GO:0005515(InterPro) | |
Cmu02g1487 | 816 | SMART | ELK_2 | 204 | 225 | IPR005539 | GO:0003677(InterPro) | |
Cmu02g1487 | 816 | Gene3D | Tetratricopeptide repeat domain | 352 | 500 | IPR011990 | GO:0005515(InterPro) | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 611 | 645 | IPR002885 | - | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 716 | 750 | IPR002885 | - | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 541 | 575 | IPR002885 | - | |
Cmu02g1487 | 816 | SMART | KNOX2_2 | 105 | 156 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cmu02g1487 | 816 | Pfam | Homeobox KN domain | 244 | 283 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu02g1487 | 816 | SMART | HOX_1 | 226 | 291 | IPR001356 | GO:0003677(InterPro) | |
Cmu02g1487 | 816 | Pfam | KNOX1 domain | 60 | 101 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cmu02g1487 | 816 | Pfam | Pentatricopeptide repeat domain | 634 | 692 | IPR002885 | - | |
Cmu02g1487 | 816 | MobiDBLite | consensus disorder prediction | 166 | 195 | - | - | |
Cmu02g1487 | 816 | ProSiteProfiles | ELK domain profile. | 204 | 224 | IPR005539 | GO:0003677(InterPro) | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 506 | 540 | IPR002885 | - | |
Cmu02g1487 | 816 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 681 | 715 | IPR002885 | - | |
Cmu02g1487 | 816 | Pfam | PPR repeat | 719 | 747 | IPR002885 | - | |
Cmu02g1487 | 816 | Pfam | PPR repeat | 509 | 538 | IPR002885 | - | |
Cmu02g1487 | 816 | Pfam | PPR repeat | 476 | 500 | IPR002885 | - | |
Cmu02g1487 | 816 | Pfam | PPR repeat | 406 | 433 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 683 | 716 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 543 | 577 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 509 | 542 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 614 | 646 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 406 | 433 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 649 | 681 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 719 | 749 | IPR002885 | - | |
Cmu02g1487 | 816 | NCBIfam | pentatricopeptide repeat | 579 | 612 | IPR002885 | - | |
Cmu02g1487 | 816 | Pfam | ELK domain | 204 | 225 | IPR005539 | GO:0003677(InterPro) | |
Cmu02g1487 | 816 | SUPERFAMILY | HCP-like | 554 | 758 | - | - | |
Cmu02g1487 | 816 | Pfam | KNOX2 domain | 109 | 155 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cmu02g1487 | 816 | Gene3D | Tetratricopeptide repeat domain | 638 | 812 | IPR011990 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g1487 | Cmu-Chr2:28630265 | Cmu05g1806 | Cmu-Chr5:28165876 | 9.20E-64 | dispersed | |
Cmu02g1487 | Cmu-Chr2:28630265 | Cmu05g2599 | Cmu-Chr5:34673380 | 3.50E-71 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5772 | PF13812 | PPR_3 | 1.20E-12 | CL0020 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g1487 | - | - | - | 0.0 |