Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1513 ATGATTGGCATGCACTCTATCTCAAATCCTTCCACTCCTCCCGAGTTCGAAGAGTTTTGGAATTCTTTCCAACGAGAATTCGAGCTCTTCCTCCCTCTCCCCATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCGTCGCCTGTTTCTGCATCGCCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGAATCCCAATCGGTCGTACGCTCCATTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTTGGTCTACCTCCGGCTTGGGTGGATGTATCTGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAGGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACACAAGACATAACCAATTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTCTGTAGCCGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACATATTTAAAGCGGCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTGTTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACCGTCGATGAGGGCCTTAAGCAACTGCAAAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGCGCATCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTTCTTCTGATCCTCAAAACCATACTATTTTAA 1092 44.87 MIGMHSISNPSTPPEFEEFWNSFQREFELFLPLPMASRNRTLLFRKYRDALRSVRVPTSSSPVSASPSTSSAAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28826174 28831631 - CmPI595203_02g015130.1 Cmu02g1513 409562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1513 363 PANTHER SYNTAXIN 125 347 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cmu02g1513 363 ProSitePatterns Syntaxin / epimorphin family signature. 273 312 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cmu02g1513 363 CDD SNARE_syntaxin16 271 328 - -
Cmu02g1513 363 SMART tSNARE_6 262 329 IPR000727 -
Cmu02g1513 363 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 267 329 IPR000727 -
Cmu02g1513 363 FunFam Syntaxin-43 113 321 - -
Cmu02g1513 363 SUPERFAMILY t-snare proteins 112 322 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu02g1513 363 Gene3D - 113 321 - -
Cmu02g1513 363 SMART SynN_4 107 222 IPR006011 GO:0016020(InterPro)
Cmu02g1513 363 Pfam SNARE domain 303 355 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1513 Cmu-Chr2:28826174 Cmu09g0526 Cmu-Chr9:4834257 2.40E-104 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1513 K08489 - csv:101207998 580.096