Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1566 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTCTTTCGCCCTCCTCTCGACAATGATGATTCTCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGCAAATCCAGAGTGTTTTCTAGGCATTCCCCTTCCTCCTCCGCTCTTCCTCCCATCCCTAAGGACACTGACCCTCCGATTCGATGGCGCAAAGGCGAATTGATTGGCTGTGGCGCCTTTGGTCGCGTTTATATGGGCATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGGCTCATGTTCAGGAGCTTGAGGAAGAAGTAAAACTTCTGAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGCACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAATTTGTTCCTGGTGGATCGATATCGTCACTTCTGGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGACAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACTTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAGCAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGCACAACGAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTCGAAGCAAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCAACTGCCTCTGAACTTCTGAAGCATCCTTTTGTTACCGGGGAGGAGGCAGAATCTCAACTTGTGTCACGTGATGCATGCACGGAGCCCCTGGAAATCCATTCTCCTTTATATACTTCAGAACTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAAAGGTATACACTGCAAACAAACTAGAAAGTGATATATGGGGAGGAAATAGTGATGATGAAATGTGTCAGATTGATGACAAGGACGATTTTATGTTAGATGAAGTAAAAATCGACTCTTCTATTATACATGAGAACATGAAGAGTTATAACCCAATTTGCGAGCCCTCTGATGATGAGGATTGCAACTTTGATAGAAGTCCAATAGTAGACCAAGGAAGCAATTTACATGAGGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGTTCTCGATGAGGACCAAAACTTCTCCTTTCCTAGTGGGCGATCACTTTCTGAAGATGAAGATGAGCTTACTGAATCAAAAATTAAAGTTTTCTTGGATGAGAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTCTATGAGGAGTTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATCGAGAGTAAGCAAGATGAAAGTACTCCTAAATACTTGAAATTGCCCCCGAAAAGCCGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCACTTGATGCTTTTGGCTCTGGTAGTCCAGGGAGTGGTAGCAGGGGTACTGTAAATGATCAAAGGTCACAACTCAACGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTATTCTGAAATACAGAGAAAGTGGAAGGAAGAGCTTGATCAAGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCTGGTGTGGGAGGCAAAACTTCATCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGGACAAGATTTGCATCTCCATTCCGGGATGATGCGTCGAGCGCTGGGAGGGAGAACAGGGAAAACTTCATCTCCTGA 2043 44.0 MQDIFASVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSALPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPTASELLKHPFVTGEEAESQLVSRDACTEPLEIHSPLYTSELEMSKTPTHPGSSDICNLDSLSCSKVYTANKLESDIWGGNSDDEMCQIDDKDDFMLDEVKIDSSIIHENMKSYNPICEPSDDEDCNFDRSPIVDQGSNLHEEALAPGSCSGVLDEDQNFSFPSGRSLSEDEDELTESKIKVFLDEKALELKKLQSPLYEEFYNSLNASCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGSGSPGSGSRGTVNDQRSQLNDWKGLLVDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGVGGKTSSPKDKAMGRPRERTRFASPFRDDASSAGRENRENFIS 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29502719 29507715 - CmPI595203_02g015660.1 Cmu02g1566 409615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1566 680 MobiDBLite consensus disorder prediction 610 635 - -
Cmu02g1566 680 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cmu02g1566 680 FunFam Mitogen-activated protein kinase kinase kinase 2 69 361 - -
Cmu02g1566 680 MobiDBLite consensus disorder prediction 575 591 - -
Cmu02g1566 680 Coils Coil 103 130 - -
Cmu02g1566 680 Gene3D Transferase(Phosphotransferase) domain 1 69 359 - -
Cmu02g1566 680 FunFam Serine/threonine-protein kinase STE11 67 160 - -
Cmu02g1566 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1566 680 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 46 336 IPR050538 -
Cmu02g1566 680 Coils Coil 615 635 - -
Cmu02g1566 680 SUPERFAMILY Protein kinase-like (PK-like) 69 371 IPR011009 -
Cmu02g1566 680 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1566 680 SMART serkin_6 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1566 680 MobiDBLite consensus disorder prediction 540 680 - -
Cmu02g1566 680 MobiDBLite consensus disorder prediction 647 680 - -
Cmu02g1566 680 MobiDBLite consensus disorder prediction 45 64 - -
Cmu02g1566 680 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1566 680 CDD STKc_MAPKKK 69 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1566 Cmu-Chr2:29502719 Cmu06g0580 Cmu-Chr6:6480080 2.80E-207 dispersed
Cmu02g1566 Cmu-Chr2:29502719 Cmu05g0923 Cmu-Chr5:8407934 4.00E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75309 PF00069 Pkinase 4.00E-72 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1566 K20606 - csv:101209358 1229.16