Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1582 ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTAAATTACAATGGAAGCAAAGATCTTTACTCTTTGTTTGGAGGAGGAATCTGGGCAAATGGAAGCTTTGAATATCCTGAAATCCCTCATGATTTTCTCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCAGCCTCCTCTGTTTTCGTTCCTAATCCTTCCCCCGAAGCTGCCGTTTCCAGAAATGGGTATCTCTTCAACGACCCAAATCCGCCATTAGAGGCTGAATCAACAACTCCAAATTCAATTCGACCCAGAAAACGAAGACCCAAATCCCGCAAGAACAAAGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGAGTCTTATGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGTGCAATTAATTTTGTGAAGGAGCTGGAACAGCAAGTTCAAGTTCTATCCACAATGGAAACTAAGGGGAAGAATAATTCAGAAGGGTGTTGTGATTCAAATTCAAAAATCCCTTTCACAGAGTTCTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTTGTTGTTCAGTGAGTGAAAATGAGAACCAATGCTCTTCCACCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATAAGGTCAAAGAGAAGGCCTAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATCTCTACTATCAACCAAATTGCTCTTTACTGTCTCAGTGTCAAGGTTGAAGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCACTTATGAACTGA 948 39.98 MALEAVVFSQDPLNYNGSKDLYSLFGGGIWANGSFEYPEIPHDFLENQTENFPFEDWNSASSVFVPNPSPEAAVSRNGYLFNDPNPPLEAESTTPNSIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKGKNNSEGCCDSNSKIPFTEFFSFPQFKAMEGCCSVSENENQCSSTIADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIALYCLSVKVEDDCKLTSVDEIASALHQLLSRIEEDSLMN 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29658195 29659580 + CmPI595203_02g015820.1 Cmu02g1582 409631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1582 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Cmu02g1582 315 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Cmu02g1582 315 MobiDBLite consensus disorder prediction 78 114 - -
Cmu02g1582 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 177 IPR036638 GO:0046983(InterPro)
Cmu02g1582 315 Gene3D - 107 195 IPR036638 GO:0046983(InterPro)
Cmu02g1582 315 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Cmu02g1582 315 PANTHER MAX DIMERIZATION, MAD 2 307 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1582 Cmu-Chr2:29658195 Cmu03g2268 Cmu-Chr3:31353262 6.50E-58 dispersed
Cmu02g1582 Cmu-Chr2:29658195 Cmu08g1073 Cmu-Chr8:23002440 8.20E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5775 PF00010 HLH 7.70E-10 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1582 - - - 0.0