Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1621 ATGGGATGTATAATTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCAAGAATAAGAAGGAGAAGATTTCTGAATGTGGTGATGATTTGGAAAGAAAAGAAGCTGGTGTGGCTGTTGTTGATGTTGCTCAGGAGGAAGAGCATGGCCATGGGGCTCAGCCCTTGACAAAAGAGCAGAGAAGAAAATTGAAACCTAACCCCAGGCTGAGTAATTTGCCAAAGCAATCTCAGGGCGAGCAGGTGGCTGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATACTGACTGGTAAGGTCGTTGCACTGAAGAAGGTACGTTTTGACAATTTAGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAGATTCTCATTTTGCGACGCCTAGATCATCCTAATGTTGTAAAGCTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTCGTATTTGAGTACATGGAGCATGATTTAGCTGGTCTTGCTGCAAATCCATCTATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTTCTATCAGGACTCGAGCATTGTCACAGCCACAGGGTGCTTCATCGCGATATTAAGGGTTCAAATCTTCTTATTGATGGTGAAGGGTTGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAACACAAGCACCCATTGACTAATCGTGTTGTAACCTTATGGTATCGATCCCCCGAGCTTCTACTTGGTGCAACTCACTATGGTGTAGGCATCGACCTTTGGAGTGCAGGTTGTATTTTAGCTGAGTTATTAGCTGGGAGGGCCATAATGCCCGGCCGTACAGAGGTTGAGCAACTACATAAGATATTCAAGCTGTGTGGCTCAGCTTCAGATGAATATTTAAAGAGGGCAAAGTTGCCAAATGCAGCCTTATTTAGACCCCGAGAACCTTATAAGAGATGTATAAAAGAGACTTTTAAGGATTTCCCACCATCATCATTTCCCCTTATAGAAACACTTCTTGCAATTGACCCAGCTGAGAGAATGACAGCTACAGATGCATTGAAGAGCGAGTTTTTCACTTCAGAACCTTATGCTTGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCTAAACGACGGGATGATGAAGCTCGGAGACAAAGAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACACACACACGTAACCGTGCTGGTAGGGCCATACCTGTTCAAGGAGCCAATGCAGAACTCCAATCAAATATTGATAGACGGCGTCTAATTACTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAAGATGGGGCACTCGGGTTCACATTGGGATATTCACGTCATATTGATCCAGCTGTTATTCCTTCTGATGTTCCATTTAGCTCCACATCATTTGGCTATCCAAACGAACTGGACCAAGCCTGGTCGGGTCCACTAGTTCAGTCTTCTAAAATCGGTGCTCAAAGGCAGAAGCATTTGGGAGGTGATGCAAAAGAACAGCAATCTTCAGTTAAAGGAAAGAAGGCAGCATGA 1686 44.07 MGCIISREVASRNLADSKNKKEKISECGDDLERKEAGVAVVDVAQEEEHGHGAQPLTKEQRRKLKPNPRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGLLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRAIMPGRTEVEQLHKIFKLCGSASDEYLKRAKLPNAALFRPREPYKRCIKETFKDFPPSSFPLIETLLAIDPAERMTATDALKSEFFTSEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTHTRNRAGRAIPVQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVIPSDVPFSSTSFGYPNELDQAWSGPLVQSSKIGAQRQKHLGGDAKEQQSSVKGKKAA 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30018491 30024088 - CmPI595203_02g016210.1 Cmu02g1621 409670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1621 561 PANTHER CELL DIVISION PROTEIN KINASE 108 393 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cmu02g1621 561 CDD STKc_CDK9_like 109 393 - -
Cmu02g1621 561 SMART serkin_6 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1621 561 MobiDBLite consensus disorder prediction 542 561 - -
Cmu02g1621 561 MobiDBLite consensus disorder prediction 529 561 - -
Cmu02g1621 561 MobiDBLite consensus disorder prediction 43 80 - -
Cmu02g1621 561 MobiDBLite consensus disorder prediction 411 440 - -
Cmu02g1621 561 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Cmu02g1621 561 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Cmu02g1621 561 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1621 561 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1621 561 SUPERFAMILY Protein kinase-like (PK-like) 104 398 IPR011009 -
Cmu02g1621 561 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Cmu02g1621 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1621 561 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Cmu02g1621 561 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Cmu02g1621 561 MobiDBLite consensus disorder prediction 400 444 - -
Cmu02g1621 561 MobiDBLite consensus disorder prediction 43 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1621 Cmu-Chr2:30018491 Cmu05g0636 Cmu-Chr5:5465101 1.10E-225 dispersed
Cmu04g0659 Cmu-Chr4:20510532 Cmu02g1621 Cmu-Chr2:30018491 1.50E-48 transposed
Cmu05g1044 Cmu-Chr5:9626629 Cmu02g1621 Cmu-Chr2:30018491 2.60E-171 transposed
Cmu11g1887 Cmu-Chr11:30902079 Cmu02g1621 Cmu-Chr2:30018491 1.60E-48 transposed
Cmu05g2220 Cmu-Chr5:31720131 Cmu02g1621 Cmu-Chr2:30018491 3.20E-59 transposed
Cmu02g1621 Cmu-Chr2:30018491 Cmu03g2235 Cmu-Chr3:30980116 2.90E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75311 PF00069 Pkinase 2.20E-67 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1621 K08819 - csv:101217497 1086.63