Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1685 ATGATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCGGGAGTTGATCATACATCGACCAGCTCCTCCACCATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGACCCGTTAACAGCGGTGGTGTCGATGACGATGACGATAGAGATAACGGTGGTGATGAACCTAAAGAAGGAGCTGTCGAAGTTCCAACGCGCCGTCCTCGTGGCCGTCCACCGGGCTCCAAGAATAAGCCTAAGCCTCCTATCTTCGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATCGCGGAAAGCATTGCTCAATTTGCTCGACGGCGACAGAGAGGTGTTTCTGTGCTTAGTGGCAGCGGTACGGTAACGAATGTCACACTCCGGCAACCATCTGCGCCCGGTGCAGTCTTAACCCTTCACGGCCGGTTCGAGATTCTTTCTTTGACTGGAACTTTCCTCCCCGGACCAGCCCCACCCGGGTCAACTGGACTAACAATCTACTTGGCCGGTGGACAAGGGCAGGTGGTGGGTGGCAGCGTAGTCGGGCCACTCACCGCTGCCGGCCCAGTGATGGTGATCGCTGCAACGTTTTCCAACGCGACATACGAAAGATTACCTTTGGAAGAGGAAGAAGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCAGCAGGCGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGAGGCGGAGGCGGAGTCGGAGATCCGTCAGCTATGCCTCCGCTGTACAATTTACCGCCGAACTTGCTACCGAATGGCGGCGGCGGGCAGATGAATCAGGAGGCTTATTCGTGGGCTCACGGCGGCCGGCCGTCGTTTTAA 888 56.53 MMANRWWTSGQMGLPGVDHTSTSSSTMRKPDLGISMNDNGGPVNSGGVDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESIAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDGSPQGIGGGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30704604 30705673 + CmPI595203_02g016850.1 Cmu02g1685 409734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1685 295 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cmu02g1685 295 Gene3D - 99 225 - -
Cmu02g1685 295 MobiDBLite consensus disorder prediction 1 95 - -
Cmu02g1685 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cmu02g1685 295 PIRSF ESCAROLA 12 295 IPR014476 GO:0003680(InterPro)
Cmu02g1685 295 MobiDBLite consensus disorder prediction 14 42 - -
Cmu02g1685 295 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Cmu02g1685 295 CDD DUF296 99 182 IPR005175 -
Cmu02g1685 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 211 IPR005175 -
Cmu02g1685 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 293 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu02g1685 295 MobiDBLite consensus disorder prediction 221 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0322 Cmu-Chr2:2935985 Cmu02g1685 Cmu-Chr2:30704604 1.40E-58 dispersed
Cmu02g1685 Cmu-Chr2:30704604 Cmu07g0391 Cmu-Chr7:3988582 6.20E-71 dispersed
Cmu02g1685 Cmu-Chr2:30704604 Cmu02g1688 Cmu-Chr2:30738360 2.90E-20 proximal
Cmu02g1685 Cmu-Chr2:30704604 Cmu05g0484 Cmu-Chr5:4050405 1.50E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1685 - - - 0.0