Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g1699 | ATGGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGATCTCCATAGCCACCGCCATAACCACCCTACGGAGACCGAAGCCTCTCAACGTCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCGCTGCCGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGATGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCATCTCCGGCAGGTCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTACAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCATCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACCGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGCTCCGTCGAGTAACGACGCGATGACGGTGACGGAACATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACCACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCTAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTTTCACGGCCGCCGTGA | 1284 | 55.45 | MASSLTSLFISRRTDMRLTNSLPDLHSHRHNHPTETEASQRHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPAGLPNPHSDLPPQPLPSSNPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITAADDSGLLPMPGNDVVEIEGSSSFKCPNPIDHGSIIPSLFNEFAGFLNASGSGHNQNQSQGNSNSQKQNFGAPVSVSSPSPAGPNSGVGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVSRPP | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 30872259 | 30877900 | - | CmPI595203_02g016990.1 | Cmu02g1699 | 409748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g1699 | 427 | Pfam | Helix-loop-helix DNA-binding domain | 239 | 284 | IPR011598 | GO:0046983(InterPro) | |
Cmu02g1699 | 427 | MobiDBLite | consensus disorder prediction | 178 | 242 | - | - | |
Cmu02g1699 | 427 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 36 | 378 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cmu02g1699 | 427 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 234 | 283 | IPR011598 | GO:0046983(InterPro) | |
Cmu02g1699 | 427 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 232 | 292 | IPR036638 | GO:0046983(InterPro) | |
Cmu02g1699 | 427 | MobiDBLite | consensus disorder prediction | 387 | 427 | - | - | |
Cmu02g1699 | 427 | MobiDBLite | consensus disorder prediction | 178 | 212 | - | - | |
Cmu02g1699 | 427 | SMART | finulus | 240 | 289 | IPR011598 | GO:0046983(InterPro) | |
Cmu02g1699 | 427 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
Cmu02g1699 | 427 | FunFam | Transcription factor bHLH66 | 231 | 296 | - | - | |
Cmu02g1699 | 427 | Gene3D | - | 229 | 291 | IPR036638 | GO:0046983(InterPro) | |
Cmu02g1699 | 427 | MobiDBLite | consensus disorder prediction | 304 | 341 | - | - | |
Cmu02g1699 | 427 | MobiDBLite | consensus disorder prediction | 22 | 42 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g1699 | Cmu-Chr2:30872259 | Cmu09g0715 | Cmu-Chr9:6719025 | 6.10E-43 | dispersed | |
Cmu06g1282 | Cmu-Chr6:23956548 | Cmu02g1699 | Cmu-Chr2:30872259 | 2.20E-77 | transposed | |
Cmu07g0083 | Cmu-Chr7:707324 | Cmu02g1699 | Cmu-Chr2:30872259 | 2.20E-16 | transposed | |
Cmu01g2186 | Cmu-Chr1:34364493 | Cmu02g1699 | Cmu-Chr2:30872259 | 4.70E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5780 | PF00010 | HLH | 1.60E-09 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g1699 | - | - | - | 0.0 |