Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1699 ATGGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGATCTCCATAGCCACCGCCATAACCACCCTACGGAGACCGAAGCCTCTCAACGTCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCGCTGCCGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGATGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCATCTCCGGCAGGTCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTACAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCATCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACCGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGCTCCGTCGAGTAACGACGCGATGACGGTGACGGAACATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACCACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCTAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTTTCACGGCCGCCGTGA 1284 55.45 MASSLTSLFISRRTDMRLTNSLPDLHSHRHNHPTETEASQRHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPAGLPNPHSDLPPQPLPSSNPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITAADDSGLLPMPGNDVVEIEGSSSFKCPNPIDHGSIIPSLFNEFAGFLNASGSGHNQNQSQGNSNSQKQNFGAPVSVSSPSPAGPNSGVGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVSRPP 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30872259 30877900 - CmPI595203_02g016990.1 Cmu02g1699 409748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1699 427 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983(InterPro)
Cmu02g1699 427 MobiDBLite consensus disorder prediction 178 242 - -
Cmu02g1699 427 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 378 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu02g1699 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983(InterPro)
Cmu02g1699 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 292 IPR036638 GO:0046983(InterPro)
Cmu02g1699 427 MobiDBLite consensus disorder prediction 387 427 - -
Cmu02g1699 427 MobiDBLite consensus disorder prediction 178 212 - -
Cmu02g1699 427 SMART finulus 240 289 IPR011598 GO:0046983(InterPro)
Cmu02g1699 427 MobiDBLite consensus disorder prediction 22 46 - -
Cmu02g1699 427 FunFam Transcription factor bHLH66 231 296 - -
Cmu02g1699 427 Gene3D - 229 291 IPR036638 GO:0046983(InterPro)
Cmu02g1699 427 MobiDBLite consensus disorder prediction 304 341 - -
Cmu02g1699 427 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1699 Cmu-Chr2:30872259 Cmu09g0715 Cmu-Chr9:6719025 6.10E-43 dispersed
Cmu06g1282 Cmu-Chr6:23956548 Cmu02g1699 Cmu-Chr2:30872259 2.20E-77 transposed
Cmu07g0083 Cmu-Chr7:707324 Cmu02g1699 Cmu-Chr2:30872259 2.20E-16 transposed
Cmu01g2186 Cmu-Chr1:34364493 Cmu02g1699 Cmu-Chr2:30872259 4.70E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5780 PF00010 HLH 1.60E-09 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1699 - - - 0.0