Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1700 ATGGCGGGTAATGGGGTTTTTGCAGAGATTCTCGATGGTGAAGTCTACAAATACTATTCCGAAGGTGAGTGGAAGAAATCCTCCTCCGGGAAAACCGTTGCCATTATCAACCCCACTACAAGGAAGACTCAGTACAGAGTTCAAGCTTGCAACCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAAACTGCTCAAAAATCATGGGCAAAGACTCCATTGTGGAAGAGAGCAGAGCTTCTTCATAAAGCTGCTGCAATTTTGAAAGAACACAAAGCTCCCATTGCTGAGTGTTTGGTGAAGGAAATTGCAAAACCAGCCAAAGATGCAGTGACTGAGGTCGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTTAGGATCTTGGGAGAGGGGAAGTTCTTGGTTTCTGACAGTTTCCCTGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCTCTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATTTGGCTGTTTCAAAAATTGCCCCGGCTTTGATTGCTGGAAATTCTATCGTCCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTCCACATGGTACATTGCTTCCACCTAGCTGGTTTTCCTAAAGGCCTCATTAGTTGTGTCACTGGAAAAGGTTCCGAGATCGGTGATTTCCTCACTATGCATCCGGGTGTCGACTGTATAAGCTTTACCGGTGGGGATACTGGTATTGCAATTTCGAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGAGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTCGATTTAGTTGCTGCTAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTAAAGGTTGTTTTGGTAATGGAGTCCGTTGCAGATGCTTTGGTCGAGAAAGTAAAGGCACGGGTGGCTAAATTAACCGTTGGTGCTCCTGAAGACGACTCAGACATTACTCCAGTTGTGACTGAGTCGTCAGCGAATTTCATTGAAGGGTTGGTAATGGATGCAAAGGAAAAGGGAGCAACATTTTGCCAAGAGTACAGAAGAGAGGGCAACCTCATTTGGCCCTTGTTGTTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTCTTGCCAGTCATTAGGATCAGTTCTATTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTATTCACAAAGGACATCAACAAGGCGATATTGATAAGTGACGCAATGGAAACTGGAACAGTTCAAATCAACTCTGCACCTGCCCGAGGACCTGATCATTTCCCATTCCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGTGTTACCAACAGCATCAACATGATGACTAAAGTGAAGACCACAGTTATCAACTTGCCAACACCTTCCTACACCATGGGAACCAAGTCAGTTAGTAAGAGAGCCCTAGGGTCCAAATTGTGA 1530 45.29 MAGNGVFAEILDGEVYKYYSEGEWKKSSSGKTVAIINPTTRKTQYRVQACNQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYRREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMGTKSVSKRALGSKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30883595 30888673 - CmPI595203_02g017000.1 Cmu02g1700 409749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1700 509 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491(InterPro)
Cmu02g1700 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
Cmu02g1700 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
Cmu02g1700 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
Cmu02g1700 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Cmu02g1700 509 PANTHER ALDEHYDE DEHYDROGENASE 9 495 IPR051020 GO:0008911(PANTHER)
Cmu02g1700 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Cmu02g1700 509 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
Cmu02g1700 509 CDD ALDH_F11_NP-GAPDH 15 487 - -
Cmu02g1700 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1700 K00131 - - csv:101208699 961.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1700 Cmu-Chr2:30883595 Cmu06g0445 Cmu-Chr6:5032240 7.00E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g1068 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.2e-212 733.8
Cmu02g1657 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cmu06g1740 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.2e-153 539.3
Cmu06g1740 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.1e-250 861.7
Cmu02g1657 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 8.3e-247 849.7
Cmu06g1068 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.8 3.1e-161 565.5
Cmu02g1657 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 6.2e-170 594.0
Cmu06g1740 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.0e-165 577.4
Cmu06g1068 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cmu11g1577 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.2e-181 633.3
Cmu11g1578 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 5.3e-177 617.8
Cmu11g1577 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cmu11g1578 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.7e-176 615.1
Cmu02g2308 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.7e-117 419.9
Cmu07g0895 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 6.9e-184 640.6
Cmu02g2308 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cmu02g1870 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.9 8.2e-215 743.4
Cmu09g1597 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 4.9e-240 827.4
Cmu01g1773 . 285 719 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.3e-181 632.5
Cmu06g1717 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.8 7.9e-252 866.3
Cmu06g1717 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 1.1e-253 872.5
Cmu02g1700 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.2e-269 922.9
Cmu01g1411 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 8.0e-261 896.3
Cmu06g0445 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.1e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40