Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1709 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAACTTCTGGGGTTAATAATACCAAGCCATGGCCAATACATTGTGAATTTTTGCAGAATCAGATGGGGAATCCTGATAAGGAGCCTGCTCTAACTGGAACTAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATATCTGAGGATGCTGCCGTTATAGACAGGAAAGAGAACCCATCTACTTTTGTTCCAGCTCTTAGATCAGGAGAATGGTCTGACATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCTGTAGCTTTCTTAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGTCATGGAGGAAAAGCCGCTGCACAGTTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCTGACTTTCCTTTAGAACTTGAAAAGGTCGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTATCTTCTGGCACAACTGCCCTGACTGCAATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGTGATTGCCGAGCAGTACTGTCAAGACAAGGATGTGCAGTAGAAATGTCCAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGCGGATTCATTGATGATGATTACCTAAACGGCCTGCTCGGTGTTACACGTGCGATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGTGCAGAACCTGAACTTAGATTAATGACATTGACAAAGGAAGACGAGTTCTTGATCATAGGTAGTGATGGAATATGGGACGTCTTCACAAGTCAAAACGCTATCGATTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTGAAAATTTGCTGCAAGGAAATAGTGGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTGTTGGTTAGCTTTCATTTGGAACCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAGAACCTCAAATTTCTTCTAGAAGGATAG 1146 44.15 MCVTDAEQVGTERPTSGVNNTKPWPIHCEFLQNQMGNPDKEPALTGTSDRTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKAAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30999635 31004518 + CmPI595203_02g017090.1 Cmu02g1709 409758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1709 381 CDD PP2Cc 83 348 IPR001932 -
Cmu02g1709 381 SMART PP2C_4 73 346 IPR001932 -
Cmu02g1709 381 FunFam Probable protein phosphatase 2C 22 67 351 - -
Cmu02g1709 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Cmu02g1709 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Cmu02g1709 381 Gene3D - 66 351 IPR036457 -
Cmu02g1709 381 SUPERFAMILY PP2C-like 73 349 IPR036457 -
Cmu02g1709 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169(InterPro)
Cmu02g1709 381 MobiDBLite consensus disorder prediction 1 23 - -
Cmu02g1709 381 MobiDBLite consensus disorder prediction 35 57 - -
Cmu02g1709 381 PANTHER PROTEIN PHOSPHATASE 2C 73 348 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1709 Cmu-Chr2:30999635 Cmu11g1871 Cmu-Chr11:30827571 1.10E-88 dispersed
Cmu02g1709 Cmu-Chr2:30999635 Cmu09g0464 Cmu-Chr9:4310254 5.60E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5782 PF00481 PP2C 5.10E-67 CL0238 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1709 K14803 - csv:101210349 725.317