Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1717 ATGAGGTGGAATTCTTTCTACACCAAAGCCTCTAAGGCTTTTCATGATCATCCTTCCATCTCCAAGCTTCTCATTGTTTTCACTATCAGTGGAGGTGGACTGGTAGCAGCTACTAATGGCAGATCTCGTTATCATTCTGCATATGCTGATGCAGGCCAACAAGATGGTGACTGCAAGAAGAAGAAAGTGGTGGTGCTTGGAACAGGATGGGCTGGGACCAGTTTTTTGAAGAATCTCAAGAGCTCGTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTACCTAGTGTCACCTGTGGGACGGTTGAAGCACGCAGCATTGTCGAACCGATTCGTAGTATTACAAGGAAGAAAGGTCTGAATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAGAAAAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGACTATGACTATCTGATTATAGCTATGGGAGCTAAATCCAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGCCCAACAGGGGTGGAATTTGCTGCAGAGCTTCATGACTTTGCAGTAGAGGATTTAGCAGGGCTGTATCCTTCATTGAAAGACTATGTGAAAATAACCCTGTTAGAGGCAGGAGATAATATTTTGAACATGTTTGACAAGAGGATTACCGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAAGTAAAAACTGGTTCCATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTATGCTCTTGGTGATTGTGCCACTGTAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCTGCAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGATGATATTTGCGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCTGCTTTGTTGAAGAAGACGCAATCCGACGCACAGAAACAGTCGACCGAACTGGATATTGAAAGCTTTAAGTCTTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACCGGATGGAGCAGTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTCGAGGGACGGGACGCCACAGGTTTCACCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTTCCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTGA 1758 43.8 MRWNSFYTKASKAFHDHPSISKLLIVFTISGGGLVAATNGRSRYHSAYADAGQQDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKKGLNIEFREAECYKIDAEKKKVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKDYVKITLLEAGDNILNMFDKRITAFAEEKFQRDGIEVKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDIAVIFCKADKDKSGTLALQEFQEVVDDICERYPQVEIYLKKKQMKNFAALLKKTQSDAQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMEQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31069105 31072090 - CmPI595203_02g017170.1 Cmu02g1717 409766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1717 585 SUPERFAMILY EF-hand 341 462 IPR011992 -
Cmu02g1717 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Cmu02g1717 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 365 383 - -
Cmu02g1717 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 223 247 - -
Cmu02g1717 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 62 84 - -
Cmu02g1717 585 PANTHER NADH DEHYDROGENASE 47 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cmu02g1717 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Cmu02g1717 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Cmu02g1717 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Cmu02g1717 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Cmu02g1717 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cmu02g1717 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 382 IPR023753 GO:0016491(InterPro)
Cmu02g1717 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
Cmu02g1717 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Cmu02g1717 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
Cmu02g1717 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Cmu02g1717 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Cmu02g1717 585 Gene3D - 432 584 - -
Cmu02g1717 585 Gene3D - 53 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1717 Cmu-Chr2:31069105 Cmu03g1152 Cmu-Chr3:5947518 3.40E-262 dispersed
Cmu05g2248 Cmu-Chr5:31910721 Cmu02g1717 Cmu-Chr2:31069105 7.20E-08 transposed
Cmu01g2211 Cmu-Chr1:34541070 Cmu02g1717 Cmu-Chr2:31069105 1.50E-71 wgd
Cmu02g0132 Cmu-Chr2:1403542 Cmu02g1717 Cmu-Chr2:31069105 5.00E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1717 K03885 - csv:101209855 1124.0