Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1770 ATGCTCCGATCCGCTCCTGGAATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTATTGTCGCCTCAGAGAGCTTCTCAAATTCTCTGGGGTACTGGAATGCTTTGTGAACCAATTCCAGATGGGTTCTATTCTGTTATTCCGGATAAAAGGCTGAAAGAGCGGTTTCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCTGAAGGTTACAGAAACGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTCTAGAAGAAAACTCCCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCTTGCCGTCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCTAATGAGGGGGCTATTGGGTGTGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTCCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCCGCTGCTGGTGAAAGCGATTCTGCAGAAAACGATTCCTGTGATTCACCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCCTGACAGTGCTGAGAAAGATGAGAGCCTTCAATTCCACAGAAAATTTGAAGCAGCTTCAAATGCATATGGTCATTCATTGCGCAACATGATGTTGCGATCAAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCGATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAACTTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAGTGAAACATTGAAGCAAAATCGTCTTTTGAGAGGGCAAGAAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCAGAGAAATGATCAAGTGGGCTCTCAAAGAGCAATATCATTACCATCATCGCCACACGTGTATAGGGGTCAAACCTCTGATAGAATTGGGCATTCAGCATATCCGAATCATGAATTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACTGAATACATGGAGATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAGAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCACTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAATGAGCCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAATAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTCGAGATTCCCGAAGGCCCGCTTGGCAGACTTATATCAGATTGTTGGGCGGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTGGACTGCGACAAGAGACCATCTCAGTTTCTGAGTCCAAAACTTGAATGCATTTCAATTGCTTTACGTGTAAGAACTGAGAAGAATCTTGGTTCGTTTACTTGCCCTGCATTCTCGTGTATGCTTTACTTCCCAGTCAAGCAAGATCGTTGGAAGGGGTCAGTAAATCTGATCTATCACAGCTTATTTGATGCTTGTTACGACCTTTCTTGGAAATCCCTTGTAAAATTCAGAAGGATATCAGGTTTAGAAGTATAA 2649 43.68 MLRSAPGMEDQRDDVAPSEQGPSNASWWSSDFEEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWGTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAALEENSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDESLQFHRKFEAASNAYGHSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMSETLKQNRLLRGQEDDRSFSHPSNERNSSSDVQRNDQVGSQRAISLPSSPHVYRGQTSDRIGHSAYPNHELASKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCDKRPSQFLSPKLECISIALRVRTEKNLGSFTCPAFSCMLYFPVKQDRWKGSVNLIYHSLFDACYDLSWKSLVKFRRISGLEV 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31588829 31599157 - CmPI595203_02g017700.1 Cmu02g1770 409819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1770 882 MobiDBLite consensus disorder prediction 1 29 - -
Cmu02g1770 882 MobiDBLite consensus disorder prediction 280 313 - -
Cmu02g1770 882 SMART serkin_6 549 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1770 882 MobiDBLite consensus disorder prediction 455 469 - -
Cmu02g1770 882 MobiDBLite consensus disorder prediction 470 502 - -
Cmu02g1770 882 MobiDBLite consensus disorder prediction 1 16 - -
Cmu02g1770 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1770 882 PANTHER SERINE-THREONINE PROTEIN KINASE 328 798 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu02g1770 882 MobiDBLite consensus disorder prediction 369 426 - -
Cmu02g1770 882 MobiDBLite consensus disorder prediction 391 408 - -
Cmu02g1770 882 Gene3D Transferase(Phosphotransferase) domain 1 628 819 - -
Cmu02g1770 882 ProSiteProfiles Protein kinase domain profile. 549 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1770 882 MobiDBLite consensus disorder prediction 453 507 - -
Cmu02g1770 882 SUPERFAMILY Protein kinase-like (PK-like) 525 797 IPR011009 -
Cmu02g1770 882 CDD STKc_MAP3K-like 555 797 - -
Cmu02g1770 882 ProSitePatterns Protein kinases ATP-binding region signature. 555 576 IPR017441 GO:0005524(InterPro)
Cmu02g1770 882 FunFam Serine/threonine-protein kinase isoform 1 540 627 - -
Cmu02g1770 882 Pfam Ethylene-responsive protein kinase Le-CTR1 66 261 - -
Cmu02g1770 882 Pfam Protein tyrosine and serine/threonine kinase 551 797 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1770 882 Gene3D Phosphorylase Kinase; domain 1 542 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1770 Cmu-Chr2:31588829 Cmu05g1823 Cmu-Chr5:28327169 6.80E-73 dispersed
Cmu02g1770 Cmu-Chr2:31588829 Cmu10g2661 Cmu-Chr10:33407916 1.90E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75318 PF07714 PK_Tyr_Ser-Thr 5.30E-59 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1770 - - - 0.0