Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1814 ATGGATGGCTCAGACGGAACCTCTGGCGGCGCTCCGCCGCCATTTCTGACCAAAACATATGAGATGGTGGGTGATCCGATGACCAATTCCATCGTATCGTGGAGTCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTCGCACAAGAACTACTTCCGATTTATTTCAAACACAACAATTTTTCTAGTTTCGTTCGTCAATTAAACACTTATGGGTTTAGAAAAATCGATCGAGAACAATGGGAATTCGCGAACGAGGGGTTTGTAAGAGGACGAACCCATCTTCTAAAAAGCATCCATAGAAGAAAACCAATCTACAGCCATAGCCAGAGCAATAGCCATGGAAATGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTCGAGCAAAAAATCAAAACCCTTCATCAAGAAAAGACCATTCTCCAATCCCAATTACAGAAACACGAAAACGAAAAAGAACAAATTGGGCTTCAAATTCAAACAATCTGCCAGCAATTATGGCGAATGGGGAATCAACAAAAGCAGCTAATTGGGATATTGGGAGCAGAGTTGCAGAAGCATCAGCAGAGCAAAAAGAGGAAAATGTGGAAAGTGAATGAGTTATTAGTTGAAGAATGGACAGAATTTGAGAGAGATGAGAAGAATAATATGAAGAAGAAGGTGAAGGTTCCGCCATTGGAGCTGATGGGGAAGCTGGAATTGTCATTGGGGTTGTGTGAGGATTTGCTTTGCAATGTGGCGCAGGTTCTGAGGGAAGGGAAGGAAATGGAAGTGAAAAAAGAAGGGGAAATGAGGAGTGGAGTGAATGATGTGTTTTGGGAACAATTCTTGACGGAGATTCCAGGGTCGTCCAAAGTTAGTGAAGTTTATTTAGATAGAAGGAACAATGTTGTAAGGGGAAAGCAAACGTACCGTACGTACGGTTTCGTTTCGGTATTTGTGCCCTTGGGGTTTTCGGCCGATATCCGAAATTCAACAAATAGCCGTCCGTCGTCGTCTCAAATCGGTGCTAAACCCTGTATCTTTATGCGTAGCTCAAAGAGGACGAGGTCTGAAGAGGGTCAAAATGATTGGATTAGTCAGCTTCCGGAATCTATTCTTGTTGACATTCTTTCGTATTTACCAACAAAGGATGCTGTAAAGATGACATTGATTTCAAGATTCAGGAATCTTTGGACCTATATTCGTTGTCTCTCCTTTGATGAATGTGCATATCATGACCACAGTAGTTATGATGGTGAAAATTATGATGGTCCACATTATGATGAAAGTTTCCTAAATCTAATTCGTCATGTCTTGATACTTCATGAACGTACTACAATTGATGAGTTTCATCTCAAATTTGCTTTCAATTTGTTTAATGCTATTCATGATGATCATTATAATTCTGATGGTTATGCATCTAAAGAAAGACGAATGGCAAGTGAGCTTACTACATGGATTAAATTTTCTTTGAGGAAACAAGTTAAGGTTCTTGATATTGATTTATTAGGATGTGGTTTGTCAGAGCCAGAAGTAAATTATGAACTGCCTACTAGTATTTTAACTAATAACTATCTAAAGGAGCTCAGTTTGGCTGGCTGTGGAATCGAGGAAAAAGGGCGTATTCATCTGACGTCTCTCACTGTGCTTTCGCTCAAGGAAATAATATTGAGTGATAAGATTATGGGTGAAATCATTGTAGGATGCCCAATGCTTGAAGAACTTTCTCTTGATGGATGTTGTGGTCTTCGTAAGCTGAAGTTAACTACTTCTAATATCAAGAGATTGAGGATTTTTATTGGATGGAGAAATGAAGTGGCAAATTCAAGGTTGGAGATTAGCTGCCCTGGTCTCAAATCATTAGAACTTGCTGGATCAATACAGCTTGTACAGTTAAAGTATTCATCTTCTATTTCCGACGCCTCCCTTTATTATAGCCGCACCTTCATGTGCGAACGCATGATATATGAAAAAGTTCAAATGCTGCTGTGGAAGCTAGCTGAAGTCAATGTTTTCATACCATGCACATGGACTATTTTGATCTTCACAATATGGGAGTTGACATATGTCCCAATTCCTGTCACTGGTTGGAAATCTGTAGAGTTCAGACTTCTTTTCACAAAGTGGCACCTGCCTGGAATATGCAGCATTCTCAGGAATTCACATTGGTTGGAAACACTGACTTTCTACATTTACCCAGGATCATACTCTACATTCTTGACTGAGGAAGCAAAGTGGATGGAGGCATATGAATTTGATGGTAAAGATTACTGGAAGTCACAGAATGGCGATTACCGTGGCCTCAGAAAGTACCTCAAGACGGTTATGATATACGGATATGTGACTGAGCCATATGTGTTGGAGCTTGTAGAATTTCTATTGAAGAATGCCTTGGTCCTCGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTCTTTGATCAGGAGGATCATTTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTTTTCCCAGGGCCTCCAAGTCTGCTGATGCTGAGATTGGGGCAGGGCCTACTCTTCTAGAACTGCCTTTTGTAATGGAATCAGGATAA 2613 40.6 MDGSDGTSGGAPPPFLTKTYEMVGDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAPLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIGILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLELMGKLELSLGLCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNVVRGKQTYRTYGFVSVFVPLGFSADIRNSTNSRPSSSQIGAKPCIFMRSSKRTRSEEGQNDWISQLPESILVDILSYLPTKDAVKMTLISRFRNLWTYIRCLSFDECAYHDHSSYDGENYDGPHYDESFLNLIRHVLILHERTTIDEFHLKFAFNLFNAIHDDHYNSDGYASKERRMASELTTWIKFSLRKQVKVLDIDLLGCGLSEPEVNYELPTSILTNNYLKELSLAGCGIEEKGRIHLTSLTVLSLKEIILSDKIMGEIIVGCPMLEELSLDGCCGLRKLKLTTSNIKRLRIFIGWRNEVANSRLEISCPGLKSLELAGSIQLVQLKYSSSISDASLYYSRTFMCERMIYEKVQMLLWKLAEVNVFIPCTWTILIFTIWELTYVPIPVTGWKSVEFRLLFTKWHLPGICSILRNSHWLETLTFYIYPGSYSTFLTEEAKWMEAYEFDGKDYWKSQNGDYRGLRKYLKTVMIYGYVTEPYVLELVEFLLKNALVLEKMVISTKRTLQPIHQYELFKDAVFDQEDHFTPEELLQFSQKLLTFPRASKSADAEIGAGPTLLELPFVMESG 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32047041 32053071 - CmPI595203_02g018140.1 Cmu02g1814 409863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1814 870 CDD F-box_AtFBL13-like 362 396 IPR053781 -
Cmu02g1814 870 MobiDBLite consensus disorder prediction 108 122 - -
Cmu02g1814 870 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
Cmu02g1814 870 ProSiteProfiles F-box domain profile. 359 390 IPR001810 GO:0005515(InterPro)
Cmu02g1814 870 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 289 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cmu02g1814 870 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1814 870 Coils Coil 120 161 - -
Cmu02g1814 870 SUPERFAMILY RNI-like 507 724 - -
Cmu02g1814 870 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1814 870 Pfam FBD 766 802 IPR006566 -
Cmu02g1814 870 Gene3D - 9 105 IPR036388 -
Cmu02g1814 870 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1814 870 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1814 870 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1814 870 SMART hsfneu3 11 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1814 870 Gene3D Ribonuclease Inhibitor 468 671 IPR032675 -
Cmu02g1814 870 MobiDBLite consensus disorder prediction 108 128 - -
Cmu02g1814 870 FunFam Heat shock transcription factor 1 8 105 - -
Cmu02g1814 870 SMART 9598neu4hmm 763 855 IPR006566 -
Cmu02g1814 870 SUPERFAMILY F-box domain 358 418 IPR036047 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1814 K09419 - - csv:101209866 941.414
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1814 Cmu-Chr2:32047041 Cmu10g0989 Cmu-Chr10:1870895 7.50E-48 dispersed
Cmu06g1814 Cmu-Chr6:29076234 Cmu02g1814 Cmu-Chr2:32047041 5.80E-10 transposed
Cmu07g1328 Cmu-Chr7:28587267 Cmu02g1814 Cmu-Chr2:32047041 1.30E-09 transposed
Cmu01g2342 Cmu-Chr1:35542248 Cmu02g1814 Cmu-Chr2:32047041 5.40E-49 wgd
Cmu02g1814 Cmu-Chr2:32047041 Cmu03g1335 Cmu-Chr3:8461212 1.60E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0528 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cmu09g0703 . 57 298 HSF AT4G17750 51.0 1.9e-59 227.3
Cmu08g1644 . 42 242 HSF AT4G17750 54.6 6.0e-58 222.2
Cmu01g0289 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cmu08g1539 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cmu05g2061 . 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cmu05g0528 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cmu07g0113 . 41 262 HSF AT5G16820 51.7 3.1e-59 226.5
Cmu09g0703 . 58 270 HSF AT5G16820 54.0 5.4e-56 215.7
Cmu08g1644 . 43 253 HSF AT5G16820 51.1 4.6e-55 212.6
Cmu01g2342 . 9 191 HSF AT5G16820 50.3 5.3e-43 172.6
Cmu06g0879 . 10 176 HSF AT5G16820 51.6 5.8e-42 169.1
Cmu10g0989 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Cmu05g0528 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cmu09g0703 . 46 266 HSF AT1G32330 51.8 9.9e-58 221.5
Cmu07g0113 . 27 226 HSF AT1G32330 53.1 3.8e-57 219.5
Cmu08g1644 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cmu08g1539 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cmu07g0113 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Cmu05g0528 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cmu09g0703 . 58 281 HSF AT3G02990 52.4 1.9e-58 223.8
Cmu08g1644 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Cmu06g0879 . 10 172 HSF AT3G02990 50.3 3.7e-41 166.4
Cmu05g0528 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Cmu09g0703 . 46 265 HSF AT2G26150 54.3 5.1e-64 241.9
Cmu10g0989 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cmu11g0168 . 28 247 HSF AT2G26150 51.1 9.0e-53 204.5
Cmu03g1335 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cmu10g2660 . 290 546 HSF AT5G03720 57.1 1.5e-75 280.4
Cmu02g1814 . 2 189 HSF AT4G18880 52.1 1.7e-50 197.2
Cmu05g0334 . 6 462 HSF AT4G13980 50.2 2.3e-112 402.9
Cmu05g0528 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cmu08g1644 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cmu09g0703 . 46 384 HSF AT3G22830 53.4 5.2e-92 335.1
Cmu07g0113 . 16 350 HSF AT3G22830 50.9 6.6e-87 318.2
Cmu08g1644 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cmu10g0989 . 12 242 HSF AT3G22830 55.7 2.3e-63 240.0
Cmu09g0703 . 45 359 HSF AT3G51910 50.9 2.0e-71 266.2
Cmu07g0113 . 26 322 HSF AT3G51910 52.5 8.3e-70 260.8
Cmu08g1644 . 31 223 HSF AT3G51910 56.0 4.9e-54 208.4
Cmu07g0113 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cmu08g1644 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cmu02g1814 . 5 140 HSF AT3G63350 57.2 4.6e-39 158.7
Cmu11g0168 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Cmu01g1632 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Cmu08g1539 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cmu01g0289 . 64 385 HSF AT4G11660 51.9 8.0e-79 291.2
Cmu08g1539 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cmu01g1632 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cmu03g1856 . 26 125 HSF AT4G11660 68.0 1.1e-38 157.9
Cmu10g0989 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cmu10g2324 . 14 222 HSF AT2G41690 53.6 5.4e-52 201.4
Cmu04g0415 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cmu08g1539 . 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cmu05g2061 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cmu03g1856 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Cmu10g0989 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cmu10g2324 . 21 118 HSF AT1G46264 68.4 7.0e-37 151.8
Cmu11g0236 . 10 181 HSF AT3G24520 65.1 2.4e-63 239.6
Cmu05g0528 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cmu09g0703 . 57 298 HSF AT4G17750 51.0 1.9e-59 227.3
Cmu08g1644 . 42 242 HSF AT4G17750 54.6 6.0e-58 222.2
Cmu01g0289 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cmu08g1539 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cmu05g2061 . 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cmu05g0528 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cmu07g0113 . 41 262 HSF AT5G16820 51.7 3.1e-59 226.5
Cmu09g0703 . 58 270 HSF AT5G16820 54.0 5.4e-56 215.7
Cmu08g1644 . 43 253 HSF AT5G16820 51.1 4.6e-55 212.6
Cmu01g2342 . 9 191 HSF AT5G16820 50.3 5.3e-43 172.6
Cmu06g0879 . 10 176 HSF AT5G16820 51.6 5.8e-42 169.1
Cmu10g0989 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Cmu05g0528 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cmu09g0703 . 46 266 HSF AT1G32330 51.8 9.9e-58 221.5
Cmu07g0113 . 27 226 HSF AT1G32330 53.1 3.8e-57 219.5
Cmu08g1644 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cmu08g1539 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cmu07g0113 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Cmu05g0528 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cmu09g0703 . 58 281 HSF AT3G02990 52.4 1.9e-58 223.8
Cmu08g1644 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Cmu06g0879 . 10 172 HSF AT3G02990 50.3 3.7e-41 166.4
Cmu05g0528 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Cmu09g0703 . 46 265 HSF AT2G26150 54.3 5.1e-64 241.9
Cmu10g0989 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cmu11g0168 . 28 247 HSF AT2G26150 51.1 9.0e-53 204.5
Cmu03g1335 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cmu10g2660 . 290 546 HSF AT5G03720 57.1 1.5e-75 280.4
Cmu02g1814 . 2 189 HSF AT4G18880 52.1 1.7e-50 197.2
Cmu05g0334 . 6 462 HSF AT4G13980 50.2 2.3e-112 402.9
Cmu05g0528 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cmu08g1644 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cmu09g0703 . 46 384 HSF AT3G22830 53.4 5.2e-92 335.1
Cmu07g0113 . 16 350 HSF AT3G22830 50.9 6.6e-87 318.2
Cmu08g1644 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cmu10g0989 . 12 242 HSF AT3G22830 55.7 2.3e-63 240.0
Cmu09g0703 . 45 359 HSF AT3G51910 50.9 2.0e-71 266.2
Cmu07g0113 . 26 322 HSF AT3G51910 52.5 8.3e-70 260.8
Cmu08g1644 . 31 223 HSF AT3G51910 56.0 4.9e-54 208.4
Cmu07g0113 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cmu08g1644 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cmu02g1814 . 5 140 HSF AT3G63350 57.2 4.6e-39 158.7
Cmu11g0168 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Cmu01g1632 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Cmu08g1539 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cmu01g0289 . 64 385 HSF AT4G11660 51.9 8.0e-79 291.2
Cmu08g1539 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cmu01g1632 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cmu03g1856 . 26 125 HSF AT4G11660 68.0 1.1e-38 157.9
Cmu10g0989 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cmu10g2324 . 14 222 HSF AT2G41690 53.6 5.4e-52 201.4
Cmu04g0415 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cmu08g1539 . 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cmu05g2061 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cmu03g1856 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Cmu10g0989 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cmu10g2324 . 21 118 HSF AT1G46264 68.4 7.0e-37 151.8
Cmu11g0236 . 10 181 HSF AT3G24520 65.1 2.4e-63 239.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002952 2 3 1 1 0 1 1 1 1 2 1 1 1 3 2 1 1 2 1 1 2 3 2 2 2 2 3 4 3 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5792 PF00447 HSF_DNA-bind 1.80E-30 CL0123 Cmu TF