Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g1823 | ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCTTCGCTTAAGCCAGAACGTGAAGGTTCGCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTGAGTTACTACTCGAAAGGGGTGCGGACGTCGACGTTCAGGACCAATGGGGCAGCACGGCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAACAAGGTGCAAAGCTACCGATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAATACGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGTCCTCAAGCCAGTCAATAATTTCCAGTCGATTGGTGAAGGGTTCTCCAAGCTATGTTCATAGGCTATACTTGCTTTGCTTTCTTGAGGAAAAACTCCATAGGCTTACCTGTGTTCAAACCTCTCAAAATCTTCCTCAAGGCTGCAGCACAAGGAACTTGAACAGGAATCTAGCCCCAGTATTAATTGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAACGAACGCCCCCCATTTACGGCTCCACCAAAGCATTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAATCCGCATAAAAGACCCACGTTTCGGCAAATAATAAGAAGGTTGGAGGATATTAACACTCGACTCATGCAAACGAGAAGCTTAAAGGCGAATTCATTCTGCAGTTCAGATCTTCTACCTCGGAAAGCAAATGACATCCACAGACGAGAAATATCCTTCATCTTTATAGTTGATATAATAATGATGCCACAAAAAGACCTGATAAACTTGCAAATCAGGATTATGAAAGCATTGTGTACGAGATGGCATGATTTAGCGACCATTAACAATGATGTAAAACCAAATCCAGGTAGTCCGTATATGAAACAATTCAACCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCCGCACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCCCTGTTTCTTCTTTCCCTGTTACATATGCTTTTTTTCGGCAGTTAATAATCTCTAATTCTTGGACATCGGGAAGTTTGAAGACTTGTCAAGATGGAAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCGCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCTTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG | 4419 | 45.96 | MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVELLLERGADVDVQDQWGSTALADAIYYKNHDVIKLLEKQGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQESSSQSIISSRLVKGSPSYVHRLYLLCFLEEKLHRLTCVQTSQNLPQGCSTRNLNRNLAPVLIEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKHYALGIQELIQECWDENPHKRPTFRQIIRRLEDINTRLMQTRSLKANSFCSSDLLPRKANDIHRREISFIFIVDIIMMPQKDLINLQIRIMKALCTRWHDLATINNDVKPNPGSPYMKQFNPIANPRWRKRKCFIDTAYSASPSLPTTSYPSSPALCFASCTTLLWRLKGQSLPLLSLHRLPVSSFPVTYAFFRQLIISNSWTSGSLKTCQDGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL | 1472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32134094 | 32148588 | + | CmPI595203_02g018230.1 | Cmu02g1823 | 409872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g1823 | 1472 | Pfam | Elongation factor Tu GTP binding domain | 658 | 850 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515(InterPro) | |
Cmu02g1823 | 1472 | SUPERFAMILY | EF-G C-terminal domain-like | 1113 | 1189 | IPR035647 | - | |
Cmu02g1823 | 1472 | FunFam | Translation elongation factor 2 | 972 | 1113 | - | - | |
Cmu02g1823 | 1472 | CDD | eEF2_snRNP_like_C | 1356 | 1434 | - | - | |
Cmu02g1823 | 1472 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 1191 | 1355 | IPR020568 | - | |
Cmu02g1823 | 1472 | Gene3D | Transferase(Phosphotransferase) domain 1 | 141 | 408 | - | - | |
Cmu02g1823 | 1472 | Pfam | Elongation factor G C-terminus | 1353 | 1439 | IPR000640 | - | |
Cmu02g1823 | 1472 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 658 | 1471 | - | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
Cmu02g1823 | 1472 | FunFam | Translation elongation factor 2 | 1352 | 1472 | - | - | |
Cmu02g1823 | 1472 | Pfam | Elongation Factor G, domain III | 1116 | 1178 | IPR041095 | - | |
Cmu02g1823 | 1472 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 660 | 970 | IPR027417 | - | |
Cmu02g1823 | 1472 | SUPERFAMILY | Protein kinase-like (PK-like) | 411 | 490 | IPR011009 | - | |
Cmu02g1823 | 1472 | Gene3D | - | 656 | 846 | IPR027417 | - | |
Cmu02g1823 | 1472 | Pfam | Elongation factor G, domain IV | 1239 | 1351 | IPR005517 | GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | Pfam | Elongation factor Tu domain 2 | 1023 | 1091 | IPR004161 | GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | SUPERFAMILY | Protein kinase-like (PK-like) | 169 | 390 | IPR011009 | - | |
Cmu02g1823 | 1472 | Gene3D | - | 34 | 140 | IPR036770 | - | |
Cmu02g1823 | 1472 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 687 | 702 | IPR031157 | - | |
Cmu02g1823 | 1472 | Gene3D | - | 1352 | 1472 | - | - | |
Cmu02g1823 | 1472 | FunFam | Translation elongation factor 2 | 1198 | 1351 | - | - | |
Cmu02g1823 | 1472 | FunFam | Translation elongation factor 2 | 1115 | 1192 | - | - | |
Cmu02g1823 | 1472 | CDD | EF2 | 660 | 859 | - | - | |
Cmu02g1823 | 1472 | SMART | EFG_C_a | 1353 | 1442 | IPR000640 | - | |
Cmu02g1823 | 1472 | SMART | EFG_IV_2 | 1235 | 1351 | IPR005517 | GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | Pfam | Ankyrin repeats (3 copies) | 43 | 130 | IPR002110 | GO:0005515(InterPro) | |
Cmu02g1823 | 1472 | Pfam | Protein tyrosine and serine/threonine kinase | 411 | 478 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu02g1823 | 1472 | Pfam | Protein tyrosine and serine/threonine kinase | 161 | 353 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu02g1823 | 1472 | Gene3D | Yeast translation eEF2 (G' domain) | 851 | 955 | - | - | |
Cmu02g1823 | 1472 | Gene3D | - | 1199 | 1351 | IPR014721 | - | |
Cmu02g1823 | 1472 | FunFam | serine/threonine-protein kinase STY46-like | 149 | 232 | - | - | |
Cmu02g1823 | 1472 | Gene3D | Translation factors | 972 | 1113 | - | - | |
Cmu02g1823 | 1472 | CDD | EF2_II | 1004 | 1099 | - | - | |
Cmu02g1823 | 1472 | NCBIfam | small GTP-binding protein domain | 660 | 804 | IPR005225 | GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | SUPERFAMILY | Translation proteins | 971 | 1105 | IPR009000 | - | |
Cmu02g1823 | 1472 | FunFam | Elongation factor 2 | 851 | 955 | - | - | |
Cmu02g1823 | 1472 | CDD | EF2_snRNP_III | 1116 | 1188 | - | - | |
Cmu02g1823 | 1472 | CDD | aeEF2_snRNP_like_IV | 1188 | 1360 | - | - | |
Cmu02g1823 | 1472 | SUPERFAMILY | EF-G C-terminal domain-like | 1356 | 1467 | IPR035647 | - | |
Cmu02g1823 | 1472 | SUPERFAMILY | Ankyrin repeat | 42 | 133 | IPR036770 | - | |
Cmu02g1823 | 1472 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 102 | - | - | |
Cmu02g1823 | 1472 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 646 | 973 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | ProSiteProfiles | Protein kinase domain profile. | 121 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu02g1823 | 1472 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515(InterPro) | |
Cmu02g1823 | 1472 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515(InterPro) | |
Cmu02g1823 | 1472 | SMART | ANK_2a | 39 | 67 | IPR002110 | GO:0005515(InterPro) | |
Cmu02g1823 | 1472 | FunFam | Translation elongation factor 2 | 651 | 866 | - | - | |
Cmu02g1823 | 1472 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 1115 | 1192 | - | - | |
Cmu02g1823 | 1472 | PRINTS | GTP-binding elongation factor signature | 694 | 702 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | PRINTS | GTP-binding elongation factor signature | 746 | 757 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | PRINTS | GTP-binding elongation factor signature | 730 | 740 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | PRINTS | GTP-binding elongation factor signature | 782 | 791 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cmu02g1823 | 1472 | FunFam | Integrin-linked protein kinase family | 24 | 147 | - | - | |
Cmu02g1823 | 1472 | Gene3D | Transferase(Phosphotransferase) domain 1 | 409 | 494 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g1823 | Cmu-Chr2:32134094 | Cmu02g1840 | Cmu-Chr2:32309309 | 0.00E+00 | dispersed | |
Cmu09g1762 | Cmu-Chr9:33752509 | Cmu02g1823 | Cmu-Chr2:32134094 | 2.10E-14 | dispersed | |
Cmu02g1822 | Cmu-Chr2:32123697 | Cmu02g1823 | Cmu-Chr2:32134094 | 0.00E+00 | tandem | |
Cmu02g1710 | Cmu-Chr2:31006303 | Cmu02g1823 | Cmu-Chr2:32134094 | 7.00E-167 | transposed | |
Cmu01g2351 | Cmu-Chr1:35587893 | Cmu02g1823 | Cmu-Chr2:32134094 | 1.20E-120 | wgd | |
Cmu02g1823 | Cmu-Chr2:32134094 | Cmu03g1325 | Cmu-Chr3:8388262 | 2.00E-133 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75320 | PF00009 | GTP_EFTU | 7.10E-57 | CL0023 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g1823 | K03234 | - | csv:101208886 | 1593.94 |