Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1823 ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCTTCGCTTAAGCCAGAACGTGAAGGTTCGCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTGAGTTACTACTCGAAAGGGGTGCGGACGTCGACGTTCAGGACCAATGGGGCAGCACGGCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAACAAGGTGCAAAGCTACCGATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAATACGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGTCCTCAAGCCAGTCAATAATTTCCAGTCGATTGGTGAAGGGTTCTCCAAGCTATGTTCATAGGCTATACTTGCTTTGCTTTCTTGAGGAAAAACTCCATAGGCTTACCTGTGTTCAAACCTCTCAAAATCTTCCTCAAGGCTGCAGCACAAGGAACTTGAACAGGAATCTAGCCCCAGTATTAATTGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAACGAACGCCCCCCATTTACGGCTCCACCAAAGCATTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAATCCGCATAAAAGACCCACGTTTCGGCAAATAATAAGAAGGTTGGAGGATATTAACACTCGACTCATGCAAACGAGAAGCTTAAAGGCGAATTCATTCTGCAGTTCAGATCTTCTACCTCGGAAAGCAAATGACATCCACAGACGAGAAATATCCTTCATCTTTATAGTTGATATAATAATGATGCCACAAAAAGACCTGATAAACTTGCAAATCAGGATTATGAAAGCATTGTGTACGAGATGGCATGATTTAGCGACCATTAACAATGATGTAAAACCAAATCCAGGTAGTCCGTATATGAAACAATTCAACCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCCGCACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCCCTGTTTCTTCTTTCCCTGTTACATATGCTTTTTTTCGGCAGTTAATAATCTCTAATTCTTGGACATCGGGAAGTTTGAAGACTTGTCAAGATGGAAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCCGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACGAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAGTTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCCGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACGGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCGCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTGCATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACCGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTAAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCTTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG 4419 45.96 MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVELLLERGADVDVQDQWGSTALADAIYYKNHDVIKLLEKQGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQESSSQSIISSRLVKGSPSYVHRLYLLCFLEEKLHRLTCVQTSQNLPQGCSTRNLNRNLAPVLIEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKHYALGIQELIQECWDENPHKRPTFRQIIRRLEDINTRLMQTRSLKANSFCSSDLLPRKANDIHRREISFIFIVDIIMMPQKDLINLQIRIMKALCTRWHDLATINNDVKPNPGSPYMKQFNPIANPRWRKRKCFIDTAYSASPSLPTTSYPSSPALCFASCTTLLWRLKGQSLPLLSLHRLPVSSFPVTYAFFRQLIISNSWTSGSLKTCQDGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32134094 32148588 + CmPI595203_02g018230.1 Cmu02g1823 409872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1823 1472 Pfam Elongation factor Tu GTP binding domain 658 850 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1823 1472 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Cmu02g1823 1472 SUPERFAMILY EF-G C-terminal domain-like 1113 1189 IPR035647 -
Cmu02g1823 1472 FunFam Translation elongation factor 2 972 1113 - -
Cmu02g1823 1472 CDD eEF2_snRNP_like_C 1356 1434 - -
Cmu02g1823 1472 SUPERFAMILY Ribosomal protein S5 domain 2-like 1191 1355 IPR020568 -
Cmu02g1823 1472 Gene3D Transferase(Phosphotransferase) domain 1 141 408 - -
Cmu02g1823 1472 Pfam Elongation factor G C-terminus 1353 1439 IPR000640 -
Cmu02g1823 1472 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 658 1471 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cmu02g1823 1472 FunFam Translation elongation factor 2 1352 1472 - -
Cmu02g1823 1472 Pfam Elongation Factor G, domain III 1116 1178 IPR041095 -
Cmu02g1823 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 970 IPR027417 -
Cmu02g1823 1472 SUPERFAMILY Protein kinase-like (PK-like) 411 490 IPR011009 -
Cmu02g1823 1472 Gene3D - 656 846 IPR027417 -
Cmu02g1823 1472 Pfam Elongation factor G, domain IV 1239 1351 IPR005517 GO:0005525(InterPro)
Cmu02g1823 1472 Pfam Elongation factor Tu domain 2 1023 1091 IPR004161 GO:0005525(InterPro)
Cmu02g1823 1472 SUPERFAMILY Protein kinase-like (PK-like) 169 390 IPR011009 -
Cmu02g1823 1472 Gene3D - 34 140 IPR036770 -
Cmu02g1823 1472 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 687 702 IPR031157 -
Cmu02g1823 1472 Gene3D - 1352 1472 - -
Cmu02g1823 1472 FunFam Translation elongation factor 2 1198 1351 - -
Cmu02g1823 1472 FunFam Translation elongation factor 2 1115 1192 - -
Cmu02g1823 1472 CDD EF2 660 859 - -
Cmu02g1823 1472 SMART EFG_C_a 1353 1442 IPR000640 -
Cmu02g1823 1472 SMART EFG_IV_2 1235 1351 IPR005517 GO:0005525(InterPro)
Cmu02g1823 1472 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515(InterPro)
Cmu02g1823 1472 Pfam Protein tyrosine and serine/threonine kinase 411 478 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1823 1472 Pfam Protein tyrosine and serine/threonine kinase 161 353 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g1823 1472 Gene3D Yeast translation eEF2 (G' domain) 851 955 - -
Cmu02g1823 1472 Gene3D - 1199 1351 IPR014721 -
Cmu02g1823 1472 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Cmu02g1823 1472 Gene3D Translation factors 972 1113 - -
Cmu02g1823 1472 CDD EF2_II 1004 1099 - -
Cmu02g1823 1472 NCBIfam small GTP-binding protein domain 660 804 IPR005225 GO:0005525(InterPro)
Cmu02g1823 1472 SUPERFAMILY Translation proteins 971 1105 IPR009000 -
Cmu02g1823 1472 FunFam Elongation factor 2 851 955 - -
Cmu02g1823 1472 CDD EF2_snRNP_III 1116 1188 - -
Cmu02g1823 1472 CDD aeEF2_snRNP_like_IV 1188 1360 - -
Cmu02g1823 1472 SUPERFAMILY EF-G C-terminal domain-like 1356 1467 IPR035647 -
Cmu02g1823 1472 SUPERFAMILY Ankyrin repeat 42 133 IPR036770 -
Cmu02g1823 1472 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Cmu02g1823 1472 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 646 973 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1823 1472 ProSiteProfiles Protein kinase domain profile. 121 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g1823 1472 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Cmu02g1823 1472 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Cmu02g1823 1472 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Cmu02g1823 1472 FunFam Translation elongation factor 2 651 866 - -
Cmu02g1823 1472 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1115 1192 - -
Cmu02g1823 1472 PRINTS GTP-binding elongation factor signature 694 702 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1823 1472 PRINTS GTP-binding elongation factor signature 746 757 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1823 1472 PRINTS GTP-binding elongation factor signature 730 740 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1823 1472 PRINTS GTP-binding elongation factor signature 782 791 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1823 1472 FunFam Integrin-linked protein kinase family 24 147 - -
Cmu02g1823 1472 Gene3D Transferase(Phosphotransferase) domain 1 409 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1823 Cmu-Chr2:32134094 Cmu02g1840 Cmu-Chr2:32309309 0.00E+00 dispersed
Cmu09g1762 Cmu-Chr9:33752509 Cmu02g1823 Cmu-Chr2:32134094 2.10E-14 dispersed
Cmu02g1822 Cmu-Chr2:32123697 Cmu02g1823 Cmu-Chr2:32134094 0.00E+00 tandem
Cmu02g1710 Cmu-Chr2:31006303 Cmu02g1823 Cmu-Chr2:32134094 7.00E-167 transposed
Cmu01g2351 Cmu-Chr1:35587893 Cmu02g1823 Cmu-Chr2:32134094 1.20E-120 wgd
Cmu02g1823 Cmu-Chr2:32134094 Cmu03g1325 Cmu-Chr3:8388262 2.00E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75320 PF00009 GTP_EFTU 7.10E-57 CL0023 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1823 K03234 - csv:101208886 1593.94