Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1825 ATGAGTAAACAGAAGGTCTTTCCAACCAATTTAGAGGGTCTAATCTTCCTTTTTTCTTATCTCACCAAGATTTCAGCCACGGAGTTCCCAAATCAAGCTGGAGAAGGATCTGCCTCTTCCCAAAAAAAAATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTTACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACAATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAACAAGAAGCCTCCAAGCTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTCAGCTCATTGTCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCCAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAACGGGAAATGGAGCTTCAGAACCACAACAACTATCTGCGAGCACAGATTGCTGAACACGAAAGAATACAACAACAGCAGCAACAACAAACGAACATGATGCAAAGGGCAACATATGAGAGTGTGGGAGGGCAATACGATGAGAATAGAAGTTATGGGGCTGTGGGACTTATGGATTCAGACACTCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTTGTTTAA 825 41.45 MSKQKVFPTNLEGLIFLFSYLTKISATEFPNQAGEGSASSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQTNMMQRATYESVGGQYDENRSYGAVGLMDSDTHYAHQDHLTALQLV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32161779 32169726 + CmPI595203_02g018250.1 Cmu02g1825 409874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1825 274 CDD MADS_MEF2_like 45 121 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu02g1825 274 ProSiteProfiles MADS-box domain profile. 44 104 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 SMART madsneu2 44 103 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 Gene3D - 57 119 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 53 100 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 ProSitePatterns MADS-box domain signature. 46 100 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 PRINTS MADS domain signature 46 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 PRINTS MADS domain signature 66 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 PRINTS MADS domain signature 81 102 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 Coils Coil 124 151 - -
Cmu02g1825 274 Pfam K-box region 130 215 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu02g1825 274 ProSiteProfiles K-box domain profile. 131 221 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu02g1825 274 FunFam agamous-like MADS-box protein AGL11 56 140 - -
Cmu02g1825 274 SUPERFAMILY SRF-like 45 116 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu02g1825 274 PANTHER SERUM RESPONSE FACTOR HOMOLOG 44 232 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu02g1825 274 Coils Coil 168 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1825 Cmu-Chr2:32161779 Cmu08g0056 Cmu-Chr8:1266397 3.10E-64 dispersed
Cmu01g2353 Cmu-Chr1:35604554 Cmu02g1825 Cmu-Chr2:32161779 2.50E-73 wgd
Cmu02g1825 Cmu-Chr2:32161779 Cmu03g1323 Cmu-Chr3:8362806 2.60E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5793 PF01486 K-box 4.10E-25 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1825 K09264 - csv:101217987 406.371