Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1840 ATGGTGAAGTTTACAGTTGAAGAGCTTCGTAGGATTATGGACTTCAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTCACAGATTCTCTTGTGGCTGCTGCTGGTATCATTGCTCAAGAAGTTGCGGGTGATGTTCGGATGACAGATACCCGTCAAGATGAGGCAGAACGGGGTATTACCATCAAATCGACTGGCATCTCCCTCTATTATGAGATGTCTGATGAATCATTGAAAAATTATAAGGGAGAGAGGCAGGGAAATGAGTACCTTATCAATCTTATTGATTCGCCTGGGCATGTTGACTTCTCATCCGAGGTTACAGCTGCTCTACGAATTACTGATGGTGCGCTTGTGGTGGTGGATTGTGTTGAAGGAGTTTGTGTCCAAACAGAGACAGTGCTTCGTCAGGCGTTGGGAGAGAGGATTCGTCCTGTGTTGACAGTTAACAAGATGGACAGATGCTTCCTTGAGCTTCAAGTAGATGGGGAAGAGGCTTATCAGACCTTCTCGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAGGATCCACTTCTTGGTGATGTCCAAGTGTATCCTGAGAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCTTTCACCCTGACTAACTTTGCAAAGATGTATGCCTCTAAATTTGGAGTAGATGAGGCTAAGATGATGGAGAGGCTTTGGGGTGAGAACTTCTTTGACCCTGCCACCAAGAAATGGACCACCAAGAACACTGGATCTGCAACGTGCAAGCGTGGATTTGTTCAGTTCTGCTATGAACCTATCAAGCAGATCATTGCAACTTGTATGCATGACCAGAAGGACAAGCTATGGCCTATGTTGCAGAAACTTGGAGTTGTCATGAAGTCTGAAGAGAAGGATCTGATGGGAAAAGCATTGATGAAGCGAGTCATGCAAACGTGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTCCCTTCCCCTGCCACGGCCCAAAAGTATCGTGTGGAGAATTTGTATGAGGGTCCACTAGATGATGTGTATGCAAGTGCCATCAGAAGTTGTGACCCTGAGGGACCTCTTATGCTTTATGTATCAAAGATGATTCCTGCATCGGACAAGGGCAGGTTCTTTGCCTTTGGTCGGGTCTTCTCTGGGAGGGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCCAACTATGTTCCTGGTGAGAAGAAAGACTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACTGTGGAGGATGTGCCTTGTGGTAACACCGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCCGTTGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCCGGAGAACTACATCTTGAGATCTGTCTGAAGGATTTGCAAGAGGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACCGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCCATGGAGGAAGGACTGGCAGAGGCTATCGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTCGTTCTAAAATTTTGTCGGAGGAATTCGGTTGGGACAAAGATCTCGCTAAGAAGATTTGGTGCTTTGGGCCTGAGACTACTGGCCCCAACATGGTTGTTGATATGTGTAAGGGAGTTCAATATCTGAATGAAATCAAGGATTCTGTTGTTGCCGGTTTCCAATGGGCCTCTAAAGAAGGTGCATTGGCCGAAGAAAACATGAGAGGCATCTGTTTTGAAGTGTGCGATGTGGTTCTTCATGCTGATGCCATCCACAGAGGAGGAGGTCAAGTCATTCCCACAGCTAGGAGGGTAATTTACGCTTCTCAGTTGACAGCCAAACCCAGACTTCTTGAGCCAGTATACTTGGTGGAAATTCAAGCTCCAGAGCAAGCTCTTGGAGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTATTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCATATCTCCCCGTCATCGAGTCATTCGGATTCTCGAGCACTCTGAGAGCTGCAACGTCTGGACAGGCATTCCCACAGTGTGTGTTTGACCATTGGGACATGATGTCTTCAGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGATTGAAGGAGCAGATGACTCCATTGTCCGAGTTCGAAGACAAGCTATAA 2532 46.52 MVKFTVEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKNYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIIATCMHDQKDKLWPMLQKLGVVMKSEEKDLMGKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDVYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32309309 32312221 - CmPI595203_02g018400.1 Cmu02g1840 409889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1840 843 Pfam Elongation Factor G, domain III 487 549 IPR041095 -
Cmu02g1840 843 CDD EF2 20 230 - -
Cmu02g1840 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 341 IPR027417 -
Cmu02g1840 843 SMART EFG_IV_2 606 722 IPR005517 GO:0005525(InterPro)
Cmu02g1840 843 CDD EF2_snRNP_III 487 559 - -
Cmu02g1840 843 FunFam Translation elongation factor 2 569 722 - -
Cmu02g1840 843 FunFam Elongation factor 2 222 326 - -
Cmu02g1840 843 Pfam Elongation factor Tu domain 2 394 462 IPR004161 GO:0005525(InterPro)
Cmu02g1840 843 Gene3D Translation factors 343 484 - -
Cmu02g1840 843 NCBIfam small GTP-binding protein domain 20 176 IPR005225 GO:0005525(InterPro)
Cmu02g1840 843 SMART EFG_C_a 724 813 IPR000640 -
Cmu02g1840 843 SUPERFAMILY EF-G C-terminal domain-like 484 560 IPR035647 -
Cmu02g1840 843 CDD aeEF2_snRNP_like_IV 559 731 - -
Cmu02g1840 843 FunFam Translation elongation factor 2 486 563 - -
Cmu02g1840 843 Pfam Elongation factor G C-terminus 724 811 IPR000640 -
Cmu02g1840 843 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Cmu02g1840 843 FunFam Translation elongation factor 2 343 484 - -
Cmu02g1840 843 SUPERFAMILY Ribosomal protein S5 domain 2-like 562 726 IPR020568 -
Cmu02g1840 843 Gene3D - 570 722 IPR014721 -
Cmu02g1840 843 Gene3D Elongation Factor G (Translational Gtpase), domain 3 486 563 - -
Cmu02g1840 843 Pfam Elongation factor G, domain IV 610 722 IPR005517 GO:0005525(InterPro)
Cmu02g1840 843 SUPERFAMILY Translation proteins 342 476 IPR009000 -
Cmu02g1840 843 Gene3D - 3 237 IPR027417 -
Cmu02g1840 843 FunFam Translation elongation factor 2 3 237 - -
Cmu02g1840 843 Gene3D - 723 843 - -
Cmu02g1840 843 SUPERFAMILY EF-G C-terminal domain-like 727 838 IPR035647 -
Cmu02g1840 843 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1840 843 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1840 843 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1840 843 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1840 843 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1840 843 FunFam Translation elongation factor 2 723 843 - -
Cmu02g1840 843 Pfam Elongation factor Tu GTP binding domain 18 221 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1840 843 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 344 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu02g1840 843 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 4 842 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cmu02g1840 843 CDD EF2_II 375 470 - -
Cmu02g1840 843 CDD eEF2_snRNP_like_C 727 805 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1822 Cmu-Chr2:32123697 Cmu02g1840 Cmu-Chr2:32309309 0.00E+00 dispersed
Cmu02g1823 Cmu-Chr2:32134094 Cmu02g1840 Cmu-Chr2:32309309 0.00E+00 dispersed
Cmu02g1840 Cmu-Chr2:32309309 Cmu10g2406 Cmu-Chr10:30534088 7.60E-21 dispersed
Cmu01g0364 Cmu-Chr1:3811922 Cmu02g1840 Cmu-Chr2:32309309 1.80E-40 transposed
Cmu06g0251 Cmu-Chr6:2799599 Cmu02g1840 Cmu-Chr2:32309309 4.50E-33 transposed
Cmu09g1020 Cmu-Chr9:10279100 Cmu02g1840 Cmu-Chr2:32309309 7.70E-116 transposed
Cmu02g1840 Cmu-Chr2:32309309 Cmu09g1762 Cmu-Chr9:33752509 2.60E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1840 K03234 - csv:101209544 1650.95