Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1848 ATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCAATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCGGTGTACGGTTGCGTTGGAGCAATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCTACCTCCTGCAACCCGACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 522 51.53 MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32398445 32400591 + CmPI595203_02g018480.1 Cmu02g1848 409897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1848 173 Coils Coil 94 114 - -
Cmu02g1848 173 MobiDBLite consensus disorder prediction 124 146 - -
Cmu02g1848 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cmu02g1848 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cmu02g1848 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1848 Cmu-Chr2:32398445 Cmu07g0502 Cmu-Chr7:5808766 2.60E-45 dispersed
Cmu01g0874 Cmu-Chr1:10699749 Cmu02g1848 Cmu-Chr2:32398445 3.50E-58 transposed
Cmu02g1019 Cmu-Chr2:16549830 Cmu02g1848 Cmu-Chr2:32398445 4.80E-18 transposed
Cmu02g1848 Cmu-Chr2:32398445 Cmu09g2153 Cmu-Chr9:37633605 3.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5798 PF03195 LOB 1.00E-43 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1848 - - - 0.0