Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1851 ATGTTTCTCGCAGGAAAGGTCGAAGAAACCCCTCGCCCATTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAGATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGAGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTCGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAGGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGCGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACAAAAGCTCCTACCAACAGCGAAGAACGTGCCGTAGCAGACAATCATGCACTTGGTGCAGGTATTGCTACTTCAAGACTTGGAACCTCAAAAGCTGGTTCATCTAGGCCAGCATCTGAACACTCATTTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAGCGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGGTAGTGAATCTAAGGTTAGACACGAGATGGAGCCATCGGCTTTCCATGACAAAGGAAACGCTCTAAACTCGGTAAAGCATCAGTCAGAGGGATTGGTTGAGCAAGACCATGGAAATGATATGAAAATAAATGAAGCAACAACAAGGGATGCAATGGAACTGAAAGACAAACATGTAATTCGAAATATAGATTTTAGAGAAGGTACACTTGGCAAATCTCAGGACGTTATCAAAAAAATTGATAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATATGAGGATTCATATCAAGACAAACATCGAGAGGACGATAAAGACGAGCATCCTCAACGAACGCGACAGTCATTATATAATCTAGATTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTAGGTTATGGGTATCAAGATTCCCCAAAGTCAAACAGTCGTAAGAGAGGCAGGGAACTCACGGGATAA 1395 42.8 MFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERAVADNHALGAGIATSRLGTSKAGSSRPASEHSFAGDQPSRAMQNHSIESSSVDFRSPSNHKTGSESKVRHEMEPSAFHDKGNALNSVKHQSEGLVEQDHGNDMKINEATTRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQSLYNLDSSNIEEGEFANANEVGYGYQDSPKSNSRKRGRELTG 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32427165 32429461 - CmPI595203_02g018510.1 Cmu02g1851 409900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1851 464 SMART cyclin_7 71 156 IPR013763 -
Cmu02g1851 464 MobiDBLite consensus disorder prediction 173 190 - -
Cmu02g1851 464 FunFam Cyclin-T1-5 like 66 170 - -
Cmu02g1851 464 MobiDBLite consensus disorder prediction 208 263 - -
Cmu02g1851 464 CDD CYCLIN_AcCycT_rpt2 67 159 - -
Cmu02g1851 464 Gene3D - 66 166 - -
Cmu02g1851 464 MobiDBLite consensus disorder prediction 162 191 - -
Cmu02g1851 464 MobiDBLite consensus disorder prediction 376 392 - -
Cmu02g1851 464 Pfam Cyclin-T2-like, C-terminal domain 69 156 - -
Cmu02g1851 464 Gene3D - 1 64 - -
Cmu02g1851 464 PANTHER CYCLIN 1 352 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Cmu02g1851 464 MobiDBLite consensus disorder prediction 376 464 - -
Cmu02g1851 464 SUPERFAMILY Cyclin-like 67 163 IPR036915 -
Cmu02g1851 464 MobiDBLite consensus disorder prediction 209 251 - -
Cmu02g1851 464 MobiDBLite consensus disorder prediction 422 436 - -
Cmu02g1851 464 MobiDBLite consensus disorder prediction 399 421 - -
Cmu02g1851 464 SUPERFAMILY Cyclin-like 1 66 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1851 K15188 - - csv:101220862 863.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0872 Cmu-Chr1:10593177 Cmu02g1851 Cmu-Chr2:32427165 4.30E-115 dispersed
Cmu02g1851 Cmu-Chr2:32427165 Cmu08g1422 Cmu-Chr8:26372495 1.40E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1084 . . . . . . . . . . . . . . . . Cpe16g00719 . . . . . . . Cla02g01816 Cam02g1922 Cec02g1943 Cco02g1987 Clacu02g1904 Cmu02g1851 Cre02g2165 . . . . . . . Cme11g01598 . . . . . . . Bma12g00594 . . . . . . . . Cpe05g01035 Bhi10g00960 Tan05g0605 . . Hepe08g0632 . . . . . . . . . . Csa06g01166 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81