Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1858 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAAAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGGCTTGTATCACTGGCACAAAGTGTTTGGATGTCCTTCACCAGGGCATTATAATATTTATTTGA 525 44.95 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYLACITGTKCLDVLHQGIIIFI 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32505108 32508518 + CmPI595203_02g018580.1 Cmu02g1858 409907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1858 174 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Cmu02g1858 174 FunFam NEDD8 protein 77 154 - -
Cmu02g1858 174 PANTHER UBIQUITIN 1 76 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
Cmu02g1858 174 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cmu02g1858 174 SUPERFAMILY Ubiquitin-like 79 152 IPR029071 -
Cmu02g1858 174 FunFam Polyubiquitin 3 1 76 - -
Cmu02g1858 174 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cmu02g1858 174 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Cmu02g1858 174 SMART ubq_7 77 148 IPR000626 GO:0005515(InterPro)
Cmu02g1858 174 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Cmu02g1858 174 CDD Ubl_ubiquitin 1 76 - -
Cmu02g1858 174 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cmu02g1858 174 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cmu02g1858 174 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cmu02g1858 174 Pfam Ubiquitin family 79 149 IPR000626 GO:0005515(InterPro)
Cmu02g1858 174 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515(InterPro)
Cmu02g1858 174 CDD Ubl_NEDD8 79 152 IPR038738 -
Cmu02g1858 174 Gene3D - 1 77 - -
Cmu02g1858 174 Gene3D - 78 156 - -
Cmu02g1858 174 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0182 Cmu-Chr2:1735822 Cmu02g1858 Cmu-Chr2:32505108 9.90E-10 dispersed
Cmu02g1858 Cmu-Chr2:32505108 Cmu10g1378 Cmu-Chr10:6772187 8.80E-65 dispersed
Cmu02g1858 Cmu-Chr2:32505108 Cmu01g2161 Cmu-Chr1:34222521 3.90E-65 transposed
Cmu02g1858 Cmu-Chr2:32505108 Cmu03g1096 Cmu-Chr3:5414205 3.90E-65 transposed
Cmu02g1858 Cmu-Chr2:32505108 Cmu05g1526 Cmu-Chr5:23570615 3.90E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1858 K12158 - csv:101214716 293.893