Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1862 ATGGATCAAGAAGTATTAGTCGACGAGAGTTTCCCGCTTTTCTCAAAATCCCACCGAAAGAAGCATAAACCTTCCGGAAACCCCAACGCTGCTCCTGTTTCCACCGCCGTCGAGAACATTGCTCCGAAGAAGTCTCTTCAGATTGAGAAATCCACAGAACTTAGCACCAAATCCACCAACAATGTTACATTTGCCGACCTCGGCTTGTCGGAATGGATCGTCCAGACTTGCAAAGAATTGGTTATGAAGAAGCCCACGGCGGTTCAAACCCACTGCATCCCTAAGATTCTTGCTGGCCTCGACGTACTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGGCTTTCCGAGACCCCTTTTGGTGTCTTCGCGTTGGTGGTCACTCCCACTAGGGAATTGGCCTATCAATTGGCTGAGCAGTTCAGGGCACTCGGTTCCTGCTTGAATTTGCGGTGCTCTGTGGTTGTTGGAGGTATGGATATGTTGAACCAGACGCAGAGTTTGTTGAAGAGGCCTCATATAGTAATTGCAACGCCGGGAAGGGTTAAAGTATTGCTGGAGAACCCTGATATCCCTGTCGTCTTTTCCAAAACTAAGTTCCTAGTTCTGGATGAAGCTGATAGAGTATTGGATGTTGGCTTTGAAGAAGAATTGAAAGTAATCTTCCAATGCTTGCCACGCAACCGTCAAACTCTATTATTCTCTGCAACAATGACGAAGGATCTGGAAACACTGCTCGAGCTTTCTGCAAACAAGGCGTACTTTTACGAGGCTTATGAAGGCTTCAAGACAGTTGATATGCTCAAGCAGCAATATGTATTTATTCCAAAGGACGTGAAGGATCTGTATCTACTACATATTTTGTCTAAAATGGAAGACATGGGTATTCGATCAGCAATCATATTTGTCCAAACTTGCAAAAGTTGTCACCTGTTAGGGTTGTTGCTTGAAGCACTCGATCAGGAGGTGGCAGCATTGCATTCATTTAAGTCACAGTCTGAGAGGCTTGCCGCACTCTACCGTTTCAAATCAGGACAAGTTCCTGTATTGCTTGCAACTGATGTTGCTAGTCGAGGTTTGGATATTCCAACAGTTGATCTTGTTATCAACTACGATATTCCAAGGTTTCCAAGAGATTATGTTCATCGAGTGGGACGTACTGCACGTGCAGGCAGAGGAGGATTGGCTGTGAGCTTTATTACCCAGAATGATGTGCAGCTTATTCATGAAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAGTGCAAGGAGAATGAAGTGCTTGAGAATATTACCAAGGTTTACAAGGCTAGACATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGTAAAAGAACGAAAGAAACAGAAATTAAAAACATTGGCAGAGAAAGGATTGATGAAGAAAAGGAACAAAAGGAGAAGAAAAGAAAAAACTTCCCAAATAATTGGCAGTTAA 1503 43.91 MDQEVLVDESFPLFSKSHRKKHKPSGNPNAAPVSTAVENIAPKKSLQIEKSTELSTKSTNNVTFADLGLSEWIVQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPHIVIATPGRVKVLLENPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPRNRQTLLFSATMTKDLETLLELSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHILSKMEDMGIRSAIIFVQTCKSCHLLGLLLEALDQEVAALHSFKSQSERLAALYRFKSGQVPVLLATDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQNDVQLIHEIEANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDDGFEEKVKERKKQKLKTLAEKGLMKKRNKRRRKEKTSQIIGS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32564111 32567749 - CmPI595203_02g018620.1 Cmu02g1862 409911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1862 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 439 IPR001650 -
Cmu02g1862 500 CDD DEADc_DDX49 64 266 - -
Cmu02g1862 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724(InterPro)
Cmu02g1862 500 Gene3D - 32 266 IPR027417 -
Cmu02g1862 500 Pfam DEAD/DEAH box helicase 86 253 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cmu02g1862 500 Gene3D - 273 498 IPR027417 -
Cmu02g1862 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Cmu02g1862 500 SMART ultradead3 81 280 IPR014001 -
Cmu02g1862 500 SMART helicmild6 319 400 IPR001650 -
Cmu02g1862 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Cmu02g1862 500 Pfam Helicase conserved C-terminal domain 301 400 IPR001650 -
Cmu02g1862 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 418 IPR027417 -
Cmu02g1862 500 MobiDBLite consensus disorder prediction 475 500 - -
Cmu02g1862 500 MobiDBLite consensus disorder prediction 16 35 - -
Cmu02g1862 500 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 19 493 IPR050079 -
Cmu02g1862 500 CDD SF2_C_DEAD 277 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0072 Cmu-Chr1:564932 Cmu02g1862 Cmu-Chr2:32564111 7.70E-97 dispersed
Cmu01g2424 Cmu-Chr1:36174029 Cmu02g1862 Cmu-Chr2:32564111 9.70E-34 dispersed
Cmu02g1862 Cmu-Chr2:32564111 Cmu09g1008 Cmu-Chr9:10146666 5.10E-65 dispersed
Cmu02g1862 Cmu-Chr2:32564111 Cmu09g0076 Cmu-Chr9:936001 9.00E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1862 K14778 - csv:101215196 870.922