Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1871 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCACCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCATCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACAGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1080 50.65 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWHLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPQRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32636481 32643740 + CmPI595203_02g018710.1 Cmu02g1871 409920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1871 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cmu02g1871 359 MobiDBLite consensus disorder prediction 1 26 - -
Cmu02g1871 359 MobiDBLite consensus disorder prediction 330 359 - -
Cmu02g1871 359 FunFam Myb family transcription factor 32 90 - -
Cmu02g1871 359 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cmu02g1871 359 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Cmu02g1871 359 MobiDBLite consensus disorder prediction 314 329 - -
Cmu02g1871 359 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Cmu02g1871 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 205 IPR046955 GO:0003700(InterPro)
Cmu02g1871 359 MobiDBLite consensus disorder prediction 1 17 - -
Cmu02g1871 359 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cmu02g1871 359 MobiDBLite consensus disorder prediction 292 359 - -
Cmu02g1871 359 Gene3D - 32 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1871 Cmu-Chr2:32636481 Cmu05g0357 Cmu-Chr5:3032904 2.20E-41 dispersed
Cmu11g0984 Cmu-Chr11:15202807 Cmu02g1871 Cmu-Chr2:32636481 7.70E-29 transposed
Cmu02g1871 Cmu-Chr2:32636481 Cmu09g2179 Cmu-Chr9:37863001 3.80E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5801 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1871 - - - 0.0