Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1878 ATGCTGAATCTTCCGTTTAGCTCGAGGGTTATGAGGTTAATGGCAATGCCTTCTTGTTTTGCTCTCTTCTTCCTCCTTCATCTTCATTTCGTAATATCGGCTTACGGTATTCAACCAGTCATTACGATTACCTCAAAAAGTCGCGCACCTCCTCCAGCAGCCGCTCTATTGTCGCATAACTTTTACCAACGAACATGCCCAGATGCGGAAGGCATCATTCACCGAAAAGTGCTAGCTTGGATCCAAAAAGATTTTACATTGGCCCCAGCCCTCATTCGCTTGCATTTCCATGATTGTGCTGTTAGGGGATGTGATGCATCGATCCTACTGAACTATCGAAGTAGCGAAAGAAGCGCCTACCCCAGCAGAACCCTAAGAGGTTTCCAAGTGATCGACGATATCAAGGCCGAGCTCGAGAGAAAATGCCCTAAAACCGTCTCCTGCTCCGACATTCTCACCGCCGCCGCCAGAGACGCCACCATTCTCGCCGGAGGTCCCTTCTGGGAGGTTCCATTTGGCCGTAAAGACGGCAGAATCACCATCGCCGCCGAAGCAGAGCGAGTCCCTCAGGGCCACGAAAACGTCACCGCTTTGATCGACTACTTCCGACACCTAGGGCTCGACGTCCTCGATCTAGTCGCCCTCTCCGGCGCCCACACCATTGGCCGAGCCGCCTGCCATAGCTTCCATGATAGGCTCTACAATTTCAACCGGACCGGTAAAGCCGACCCGAATCTGAAACCTCCATTTCTGAATATGCTACGAAAGCATTGCAAGAACGATATGGATCTCGTGTTTCTGGATGCGACAACTCCGAAAATGTTCGATACTGCTTATTTCACGAACCTTCAGAAGAAATTAGGGCTTCTTGTGACGGATCAAGCGCTGTTTTCGGATGAGAGAACTTCTTCGTTTGTGGATTTGATGGCGAATCAGCCGTTTCTTTTCGATAGCCAATTTTCGGCGTCGATGGTGAAATTGGGAAATGTGGGAGTGCTCACCAGGAAAAATGAAGGAGAAATTCGAGTCAATTGCAATTTCGTCAATCCCAGTAGAAGGAAGTAA 1065 49.39 MLNLPFSSRVMRLMAMPSCFALFFLLHLHFVISAYGIQPVITITSKSRAPPPAAALLSHNFYQRTCPDAEGIIHRKVLAWIQKDFTLAPALIRLHFHDCAVRGCDASILLNYRSSERSAYPSRTLRGFQVIDDIKAELERKCPKTVSCSDILTAAARDATILAGGPFWEVPFGRKDGRITIAAEAERVPQGHENVTALIDYFRHLGLDVLDLVALSGAHTIGRAACHSFHDRLYNFNRTGKADPNLKPPFLNMLRKHCKNDMDLVFLDATTPKMFDTAYFTNLQKKLGLLVTDQALFSDERTSSFVDLMANQPFLFDSQFSASMVKLGNVGVLTRKNEGEIRVNCNFVNPSRRK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32722047 32724006 - CmPI595203_02g018780.1 Cmu02g1878 409927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1878 354 PRINTS Plant peroxidase signature 322 335 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 282 299 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 164 179 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 90 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 266 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 66 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 210 222 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 126 139 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Plant peroxidase signature 145 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 SUPERFAMILY Heme-dependent peroxidases 57 350 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 Pfam Peroxidase 75 311 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 ProSitePatterns Peroxidases proximal heme-ligand signature. 211 221 IPR019793 -
Cmu02g1878 354 PANTHER PEROXIDASE 25-RELATED 54 345 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cmu02g1878 354 FunFam Peroxidase 189 327 - -
Cmu02g1878 354 PRINTS Haem peroxidase superfamily signature 88 102 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Haem peroxidase superfamily signature 268 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Haem peroxidase superfamily signature 211 226 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Haem peroxidase superfamily signature 146 163 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 PRINTS Haem peroxidase superfamily signature 164 176 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 ProSiteProfiles Plant heme peroxidase family profile. 56 349 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu02g1878 354 ProSitePatterns Peroxidases active site signature. 88 99 IPR019794 GO:0004601(InterPro)
Cmu02g1878 354 Gene3D Peroxidase, domain 2 189 327 - -
Cmu02g1878 354 CDD secretory_peroxidase 57 348 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cmu02g1878 354 Gene3D - 60 349 - -
Cmu02g1878 354 FunFam Peroxidase 60 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1878 Cmu-Chr2:32722047 Cmu03g1009 Cmu-Chr3:4689885 7.90E-105 dispersed
Cmu02g1878 Cmu-Chr2:32722047 Cmu01g1615 Cmu-Chr1:29853203 1.30E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1878 K00430 - csv:101204209 593.578