Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1880 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCACATTTTTGTTTCTTCTTCCTCTTCTTCTTCCTCTCTGTTCACAACGCATTGGGCGGCCATGACCAAGAAACTGTAAAACTCGATCTACTTCACCGTCACCATCCACAAGTCGCCGAGAAGCTTCACGGCAATATGAAAGTTGAAGATCTCAACGATCGGATCAAGGATATTCACGATCACGACCTCAAACGATATCAAACCATCTCCACATCGTTGAACCGGAAGCAAATTGAGGAGAAATTGAAGGCGGAAGCGGAGGTTGAGGCAGCGAAGGATCCGATACTTCCACCGACGTCGCCTACGCCGATAGGGCTGAAAATGATATCAGGTTCAGATTATGGAAGTAGTGAGTATTTTGTTCAATTGAAAGTGGGAACACCGCCTCAGACGTTCATGTTGATCGTGGATACCGGAAGCGATCTAACGTGGATAAAATGTAGATATCGGAGGTGTATCGGAAATTGTAGCAGCAAGGCGAATCATAAGAGCCGAAACGAACGGAAAATGAGATTTAGAAATGCGTTTTTGGCAAATTATTCCTCGTCTTTCAAGACCATTCATTGCAGCTCCACGACTTGTACCACTGACCTCGCAGATCTGTTCTCAATTGGGGAATGCAAAACCCCAACTAGCCCTTGTATCTATGATTACAGCTACGCAGGAGGAGCAAGTGCAAAGGGAATATTCGCAATCGAGACCCTAACCGTAGACCTAACAAACGGAAAAGAAAAACAGCTCCACAATTCTATAATCGGCTGCACCGAATCAGTCCAAGGAAGGATATTTGGCGGAGCCGACGGCGTCATTGGCTTAGGCACTAGCCCCTACTCTTTTACCTACAAAGCCGCCGAAAACGCCAACGGCGGCGGCTTCTCCTACTGCCTTGTCGACCATCTCAGCCACCACACCGCCACCAGCTACTTCATCCTCGGCGCCCCTTCCCCCTCCGCTTCCGCTGCTGCCTCCTCCGTCGTCCCTTCTGGCAACATGACCTTCACCAAACTCTTCGTCGGCGACCCTTACAACAGCTTCTACGGCGTCGATCTCATTGCAATCTCCGCCGACGGCGTCATGCTCAACATTCCTCCCCGCGTTTGGGACATCAATTCCGGCGGCGGTACCATCCTCGACTCCGGAACTAGCCTCACCATGCTGGCGGCGCCGGCGTTCGATATGGTCATGGAAGCTCTGACTCCTAAGCTGAAGCATTTCGAGCAAATTGAAGTCGAACCCTTCAAATTTTGCTTCAATAATAGCCAGTACACCCATGAAATGGCCCCGAAGATCCGATTCCATTTCGGCGACGGCACGATGTTCCAGCCGCCGGTGAAAAGCTACGTTGTGTCGGCGGGTGAATATATTAGCTGTATTGGGTTCGTTTCTATGCCTTTTCCGGCCTACAATATCATCGGGAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCTTTAGGAGAAAAGTCGGTTTTGCCCCCTCTGAATGCGTCTAA 1530 49.28 MLGYRKPMSPISHFCFFFLFFFLSVHNALGGHDQETVKLDLLHRHHPQVAEKLHGNMKVEDLNDRIKDIHDHDLKRYQTISTSLNRKQIEEKLKAEAEVEAAKDPILPPTSPTPIGLKMISGSDYGSSEYFVQLKVGTPPQTFMLIVDTGSDLTWIKCRYRRCIGNCSSKANHKSRNERKMRFRNAFLANYSSSFKTIHCSSTTCTTDLADLFSIGECKTPTSPCIYDYSYAGGASAKGIFAIETLTVDLTNGKEKQLHNSIIGCTESVQGRIFGGADGVIGLGTSPYSFTYKAAENANGGGFSYCLVDHLSHHTATSYFILGAPSPSASAAASSVVPSGNMTFTKLFVGDPYNSFYGVDLIAISADGVMLNIPPRVWDINSGGGTILDSGTSLTMLAAPAFDMVMEALTPKLKHFEQIEVEPFKFCFNNSQYTHEMAPKIRFHFGDGTMFQPPVKSYVVSAGEYISCIGFVSMPFPAYNIIGNILQQNHLWQFDFFRRKVGFAPSECV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32744316 32746053 - CmPI595203_02g018800.1 Cmu02g1880 409929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1880 509 PANTHER OS07G0603500 PROTEIN-RELATED 25 505 IPR051708 -
Cmu02g1880 509 Gene3D Acid Proteases 115 323 IPR021109 -
Cmu02g1880 509 CDD pepsin_A_like_plant 129 508 IPR034161 -
Cmu02g1880 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cmu02g1880 509 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cmu02g1880 509 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cmu02g1880 509 PRINTS Pepsin (A1) aspartic protease family signature 386 397 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cmu02g1880 509 Gene3D Acid Proteases 330 509 IPR021109 -
Cmu02g1880 509 Pfam Xylanase inhibitor N-terminal 130 323 IPR032861 -
Cmu02g1880 509 ProSiteProfiles Peptidase family A1 domain profile. 130 504 IPR033121 -
Cmu02g1880 509 FunFam Aspartyl protease family protein 339 509 - -
Cmu02g1880 509 Pfam Xylanase inhibitor C-terminal 357 504 IPR032799 -
Cmu02g1880 509 SUPERFAMILY Acid proteases 122 508 IPR021109 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1880 Cmu-Chr2:32744316 Cmu11g1644 Cmu-Chr11:28691331 2.30E-49 dispersed
Cmu02g1880 Cmu-Chr2:32744316 Cmu01g0546 Cmu-Chr1:5795072 6.30E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1880 - - - 0.0