Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1883 ATGAAGCTCCGACCAGATTTTCTTCGACCCATAATCGCCTATGTAGTCCCAAAACCTCCATGGTTCCATTTATTTCATTCGCCCACTGACCCAATCGCCACTTCCAATGAGGTCTCCACCATAATCGAAACTATTGATCCTTTCGAAGATGGATTGGAAGTCATATCGCCCCATATTTCGTCTGATGTAATTACCTCCGTCATTGAAGATCAATCGAATCCCCGACTTGGATTTCGACTTTTTATCTGGTCGTTAAGGAGAAAGAGTCTCTGCTGCAATGCCTCGCAGAATTTTATCATCGACAGGTTAGTAAAGGACAATGCCTTCGAATTATATTGGAAAACTCTTCAAGAGCTTAAGGATTCAGCAATTGAAATTCCATCGGATGCTTTCTCTGTGTTGATTGAGGCATACTCAAAAGCGGGCATGGATGAGAAGGCCGTTGAATCATTTGGTCTGATGCGGGATTTTGACTGTAAGCCCAACATTTTTGCTTTCAATTTGATTTTGCATGTTTTGGTGCGAAAAGAAGCATTTTTGTTAGCTTTAGCAGTGTATAATCAGATGCTGAAATGTAATTTGAATCCGAATGTGGTTACCTACAGCATATTGATTCATGGATTCTGTAAATCTAGTAAAACTCAAGATGCCCTTGTACTTTTTGATGAAATGACCTATAGAGGAATATTGCCCAACGAGATAACTTATTCGATTGTTCTTTCTGGACTGTGTCAAGCTAAGAAAATTGATGATGCCCAGAGATTGTTCAGTAAGATGAGAGCGATTGGGTGTAGTCCAGATGTAATAACTTATAATGTTTTGCTTAATGGATTTTGTAAGTTAGGTTATTTGGATGAAGCTTTTTCATTGTTGCAATCATTTGAAAAGGATGGCCATATTCTTGGAGTTAATGGGTATAGTTGTTTGATTAATGGCTTGTTTAGGGCTAGGAGATATGACGAAGCACATATGTGGTACCAGAAAATGTTGAGGGAAAACATCAAGCCCGATGTTATCTTGTATACTATTATGATCCAAGGTTTATCACAAGAAGGTCGGGTTACTGATGCATTGGCACTGTTGGATGAGATGACAGAAAGAGGGCTTAGTCCAGATACTGCTTGTTACAATGCTTTAATTAAAGGGTTTTGTGATATGGGTCATTTGGATAAGGCTCAGTCCCTTCGACTTGAGATTTCAAAGCACGACTGTTTCCCTGATAATCACACATACTCCATTCTCATTTGTGGTATGTGCAAGAATGGGCTAATAAGTGAGGCACAACATATATTTAATGAAATGGAGAAGCTTGGATGCGTTCCTTCTATAGTGACCTTCAATTCTCTCATTGATGGACTTTGCAAAGCCGGTAAGCTTCAGGAAGCTTACCTATTATTTTACAAAATGGAGATAGGAAGAAAACCTTCTTTGTTTCTTCGGCTTTCTCAGGGCGCCAATAAGGTTCTTGACAATGCCAGTCTCCAAGTTATGATCCAGCAATTATGTGAGTCAGGATTGATTCTTAAGGCCTACAAGCTTCTTATGCAGCTAGTTGAGAGTGGGGTTTTGCCAGATATTAGGACTTATAACATCCTAATCAATGGATTATGCAAGAATAACAATATTAATGGTGGTTTTAAGCTCTTCAAGGCCATGCAGCTCAAAGGACGCTTGCCAGATTCGGTTACATACGGGACTCTAATAGATGGGCTCTATAGAGTTGGTAGGGATGAGGATGCACTAGGAATTTTTGAACAAATGGTAAAGAATGGGTGCAAGCCTGATTCTTCTATTTACAAGTCCATCATGACTTGGTCGTGTCGAAAAAAGAAGGTTTCACTAGCTTTTAGTGTTTGGATGAAGTATCTGAGGAATTTTCGTGGCTGGGAAGATGAAAAGGTAGCAGTAGTAGCGGAAAGTTTCAATAAAGGAGAGCTTGAGACAACAATTCAGAGATTAATTGAAATGGACATGATATCAAAAGATTTCGACTTAGCTCCATACACCATTTTTCTCATTGGATTGTGTCAAGCCGAGAGGGTTTCCGAAGCCTTTGCTATATTTTCTGTTCTCAAGGACTTCAAGATGAATGTAAGTTCAGCGAGCTGTGTGATGTTGATTGGCAGGTTGTGCATGGAAGGAGAACTTGACCTAGCCGTGGATGTTTTTCTTTATACACTAGAAGAAGGCTTTATGTTGATGCCTCGAATTTGCAATCAGCTGCTGAGCCGCCTTCTTCATTTGGAGGACAGAAAAGACCATGCTCTTGTTCTTATACATAGAATGGAGGCTTTTGGATATGATATGAATACTCTTCTCCACGACAGTACTAAGTTACTTCTTCATGATCATTGGGAATCATTGCAAGCTAAAGCTTTCATGCCTAAATACACGCGGCTGTCGCCAACTCACAACAAAGAATTGCCAAAATAA 2433 39.75 MKLRPDFLRPIIAYVVPKPPWFHLFHSPTDPIATSNEVSTIIETIDPFEDGLEVISPHISSDVITSVIEDQSNPRLGFRLFIWSLRRKSLCCNASQNFIIDRLVKDNAFELYWKTLQELKDSAIEIPSDAFSVLIEAYSKAGMDEKAVESFGLMRDFDCKPNIFAFNLILHVLVRKEAFLLALAVYNQMLKCNLNPNVVTYSILIHGFCKSSKTQDALVLFDEMTYRGILPNEITYSIVLSGLCQAKKIDDAQRLFSKMRAIGCSPDVITYNVLLNGFCKLGYLDEAFSLLQSFEKDGHILGVNGYSCLINGLFRARRYDEAHMWYQKMLRENIKPDVILYTIMIQGLSQEGRVTDALALLDEMTERGLSPDTACYNALIKGFCDMGHLDKAQSLRLEISKHDCFPDNHTYSILICGMCKNGLISEAQHIFNEMEKLGCVPSIVTFNSLIDGLCKAGKLQEAYLLFYKMEIGRKPSLFLRLSQGANKVLDNASLQVMIQQLCESGLILKAYKLLMQLVESGVLPDIRTYNILINGLCKNNNINGGFKLFKAMQLKGRLPDSVTYGTLIDGLYRVGRDEDALGIFEQMVKNGCKPDSSIYKSIMTWSCRKKKVSLAFSVWMKYLRNFRGWEDEKVAVVAESFNKGELETTIQRLIEMDMISKDFDLAPYTIFLIGLCQAERVSEAFAIFSVLKDFKMNVSSASCVMLIGRLCMEGELDLAVDVFLYTLEEGFMLMPRICNQLLSRLLHLEDRKDHALVLIHRMEAFGYDMNTLLHDSTKLLLHDHWESLQAKAFMPKYTRLSPTHNKELPK 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32761139 32763571 - CmPI595203_02g018830.1 Cmu02g1883 409932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1883 810 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 69 470 - GO:0003729(PANTHER)
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 234 268 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 269 299 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 444 470 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 409 442 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 562 596 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 199 233 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 306 338 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 375 407 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 130 163 IPR002885 -
Cmu02g1883 810 NCBIfam pentatricopeptide repeat 528 560 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cmu02g1883 810 Gene3D Tetratricopeptide repeat domain 400 472 IPR011990 GO:0005515(InterPro)
Cmu02g1883 810 Gene3D Tetratricopeptide repeat domain 306 399 IPR011990 GO:0005515(InterPro)
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat 130 159 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat 496 522 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat 668 693 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat 306 334 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cmu02g1883 810 Gene3D Tetratricopeptide repeat domain 646 796 IPR011990 GO:0005515(InterPro)
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat family 336 385 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat family 161 210 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat family 413 455 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat family 238 280 IPR002885 -
Cmu02g1883 810 Pfam PPR repeat family 524 572 IPR002885 -
Cmu02g1883 810 SUPERFAMILY HCP-like 242 374 - -
Cmu02g1883 810 Gene3D Tetratricopeptide repeat domain 61 175 IPR011990 GO:0005515(InterPro)
Cmu02g1883 810 Gene3D Tetratricopeptide repeat domain 176 301 IPR011990 GO:0005515(InterPro)
Cmu02g1883 810 Gene3D Tetratricopeptide repeat domain 473 623 IPR011990 GO:0005515(InterPro)
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cmu02g1883 810 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1883 - - - 0.0