Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1885 ATGATACTACACTCACAAGCGTCCTCTGTTTTCACAATTTCCTCTACAGTTACCGATAATCACACGTATAAGTATCACCGGCGGCAACTTCAGCTTCCTGTTTACGGCGGTGGAGCGAGTTTTCATGTTCGTGTTTCTAAAATTTTACTTCCGACGGCTGCGGTCACGGCCGGTTCCAGCGGCGGAAGTCTGACTAGAAGGAAATATAGGAATCGTGTTAACGACTTTAGGTCTTCTGCAAGTGCCTCCAATTTGTCCTCCTCGACTCAGCCACCGGATATTCCAACTCCAGGTTCAGGTCCAGATAAGAATGAGGAAGCTCAGAGGCCCGGACCTGATCTGAAAATGCTTCTGAAGAGGTTTTGGAAAGTTGCCGCACCTTATTGGTCCTCGGACGATAAAGTGCAAGCTCGATGGCAGCTGGCTGCTGTCTTCGCTCTGTCCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTTGGCCGTGACTTCTACAACGCTCTTGCTAACAAGGACCAAGAACAGTTCACTAAGCAACTCCTCTACTACCTAGGTGCCTTCGCTGGAGGTATTCCGGTTTTTGTATTGAGAGATTATGCAAAGGACATGCTTTCCCTTAGATGGAGGTCATGGATGACTAAACATTACATGGAGCGTTATCTAAAGGACCAGTCTTTCTATAAAATTCAGTCCCAGTCCATTATTGATAATCCAGACCAGCGGATCGTTGATGATCTCAGTTCTTTCACAGGGACAGCTCTTTCATTTTCTTTGGCACTTTTCAATTCTACCGTGGATTTAATTTCATTTAGTAACATCTTATATGGTATCTATCCACCGTTGTTTGTTGTTCTTCTTTTATATTCGATTGGAGGAACGGCAATCAGTGTTTTCCTCGGAAAGGGTTTGGTTAATCTGAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTTCGCTATGGACTTGTCCGCATTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAAAATGAGATGCAGCTTATTCTGCAACGGTTTAGAAGTGCTGTTGAGAATTTAACTAAATTACTAATAGCATCCAGAAATCTTGAGTTCTTTACCAATGGCTATCGCTACCTCATTCAGATTCTTCCAGCTGCTGTTGTTGCCCCAATGTACTTTTCAGGAAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTCAATCACATCCTTGGGGATTTTTCCCTCATTGTATATCAGTTTCAGGCCATCAGTGCTTTTTCAGCAATTATTGATCGCCTAGGTGAATTTGATGACCTCTTGGATGGCAGTGCCCCTAATGTTCTCTCTAACACCTCAGAAGAGATACATCTCATGTACTCCCATGTGGAAAGTTCACCTCTACTAGAATCAAATGGGTCCATGGCCCTAGACAAACGCCTGAAATTATTGGAGATAGAGAATATGACTTTAGAGGCACCAAATGGAGCTACTTTGGTGAGAGACTTGGCGTTAATAGTTAAAGAAAAGGAGCATTTACTGGTAATGGGACCCAGTGGATGTGGCAAGACCTCATTGTTAAGAGTTTTGGCAGGTCTTTGGAATGTTGGAAAAGGAAAAATCACGTTTTATATAAAAGACTATCCGGAGCAGTTAGTTTCTCAAAATGGATTGCAAACCGAAGCACATACAGGAGAAGATGTATCCAAAGAAAATAGTAGACCACTCAACAAGAATTATCGAGGGATATTTTTCCTTCCTCAAAGACCATATATGGTTCTGGGTACACTACGTCAGCAGCTGCTTTATCCTACATGGGCTGAAGGTTCTGTCACATCAGCAGGTCATGCTGAACCAAATGTATTCCCTTCCTTTTTGACAGGTGCGTCGAATATCAACAAGGTTGGCGAAAATCCTGATAAGCCAACAACGGATGACCTAATCAAGGTTCTGGATAAAGTGGGTCTTGACTACCTATTGACTCGTTTCAGTAGTCTGGACACGACTTGTGAATGGTCCAGTGTTCTTTCTCTCGGTGAGCAACAACGTATTGCTTTTGCACGTCTATTACTTTCAAGGCCAAAGTTAGTCCTGCTGGATGAGTCTACTAGTGCGTTAGACGAAGCGAATGAGGCACGTTTATACAAGCAAATCGCAGGTGCTGGAATTACATATATTAGCATTGGCCATCGACGAACTTTACGTAATCACCATAACAGTATTTTGCACATATCCAAGTTGTCTGATGGCAATCAACGCAATTGGAACATTGAACCCATTATTCGGGATGATTTTCGTTTGCAGGGGAGAATCTATTCTATGAAGGATCTTAACGATGGGATATCGCCTCAAATGACGAGTAAAGAATATCAGAAAGTTACCAACGGTTATGTAGGTGTAATTTTGCAAAGCAAAGTAACCGTCTATTATTACATCCGTCGGTTATTGTACTAG 2451 42.47 MILHSQASSVFTISSTVTDNHTYKYHRRQLQLPVYGGGASFHVRVSKILLPTAAVTAGSSGGSLTRRKYRNRVNDFRSSASASNLSSSTQPPDIPTPGSGPDKNEEAQRPGPDLKMLLKRFWKVAAPYWSSDDKVQARWQLAAVFALSLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSLRWRSWMTKHYMERYLKDQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVVLLLYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAIIDRLGEFDDLLDGSAPNVLSNTSEEIHLMYSHVESSPLLESNGSMALDKRLKLLEIENMTLEAPNGATLVRDLALIVKEKEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQLVSQNGLQTEAHTGEDVSKENSRPLNKNYRGIFFLPQRPYMVLGTLRQQLLYPTWAEGSVTSAGHAEPNVFPSFLTGASNINKVGENPDKPTTDDLIKVLDKVGLDYLLTRFSSLDTTCEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKQIAGAGITYISIGHRRTLRNHHNSILHISKLSDGNQRNWNIEPIIRDDFRLQGRIYSMKDLNDGISPQMTSKEYQKVTNGYVGVILQSKVTVYYYIRRLLY 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32775983 32785504 + CmPI595203_02g018850.1 Cmu02g1885 409934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1885 816 ProSitePatterns ABC transporters family signature. 675 689 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu02g1885 816 CDD ABCD_peroxisomal_ALDP 483 751 - -
Cmu02g1885 816 Gene3D ABC transporter type 1, transmembrane domain 102 439 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu02g1885 816 Gene3D - 475 753 IPR027417 -
Cmu02g1885 816 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 83 757 IPR050835 -
Cmu02g1885 816 SUPERFAMILY ABC transporter transmembrane region 119 436 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cmu02g1885 816 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 483 773 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu02g1885 816 MobiDBLite consensus disorder prediction 80 110 - -
Cmu02g1885 816 Pfam ABC transporter 500 703 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cmu02g1885 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 744 IPR027417 -
Cmu02g1885 816 Pfam ABC transporter transmembrane region 2 134 390 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cmu02g1885 816 SMART AAA_5 508 747 IPR003593 GO:0016887(InterPro)
Cmu02g1885 816 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 425 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1885 Cmu-Chr2:32775983 Cmu10g1677 Cmu-Chr10:19046738 4.30E-45 dispersed
Cmu02g1885 Cmu-Chr2:32775983 Cmu02g1891 Cmu-Chr2:32827813 8.70E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1885 - - - 0.0