Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1901 ATGCAAGATCCAGCGCCATCAAACCCTATCCACACTCCCAATTCCAATCAAATTCCTCCACTCAATGTTGCAGCACCGCCGCCGAAGACTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCCTCTTCATCAATGTTTGCCAATGCGAATACTGGCAATACCTCATTTATGCCTAGAGTAGGCTCTCATCATCGGAGAGCTCATTCAGAAGTTAGTTTCCGGTTGCCGGAGGATATGATGGATATATCCGCGTCGGATCCGTTCAATGGCGGTTCGTCCACCGCAAGTCTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTTGTAGATCATAATGGTAATGGAGGAAGTGAAGGTGCTGGTGGTAGTGAAGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGTGTTTCGGTGGATGGAACGACGTCGTCGTCGAGTATGTTTGGGGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCGGAGCTTTGGTCCAGTGATCCCAAACGCGCTAAAAGGATATTGGCAAATCGACAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCAAGATATATACAAGAATTGGAGCGCAAAGTGCAAACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGACACAACGGGTCTCAGTACTGAAAATACAGAGCTTAAACTTCGGTTACAGGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGAAGCATTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACTGGGGAAATGATGAGCCCATCTGAGTCTTTTAACTTAGGAATGCATCACATGGCGTACGCCCCGTCATCTTTCATTCAACTTTCACAGCAACAACCAGGATCTGTTGGCCTTCAAAATATGCAAATGCCACCATATAGCCATTCTCCATCCAATATGACTACTCACCCTCTGCTTCCATCAGAGTCTCATTCACTCTCTGAGGTTCTGCAGACCGACTCTCTTGGCCGATTGCAGGGTCTCGACATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGGTCCTTCACTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1170 47.78 MQDPAPSNPIHTPNSNQIPPLNVAAPPPKTHKPPPVANATASSSSMFANANTGNTSFMPRVGSHHRRAHSEVSFRLPEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDHNGNGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQQPGSVGLQNMQMPPYSHSPSNMTTHPLLPSESHSLSEVLQTDSLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32933899 32937134 + CmPI595203_02g019010.1 Cmu02g1901 409950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1901 389 MobiDBLite consensus disorder prediction 1 63 - -
Cmu02g1901 389 SUPERFAMILY Leucine zipper domain 190 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1901 389 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1901 389 Coils Coil 206 233 - -
Cmu02g1901 389 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 37 342 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu02g1901 389 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1901 389 MobiDBLite consensus disorder prediction 123 165 - -
Cmu02g1901 389 MobiDBLite consensus disorder prediction 1 19 - -
Cmu02g1901 389 CDD bZIP_plant_RF2 191 240 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu02g1901 389 MobiDBLite consensus disorder prediction 36 59 - -
Cmu02g1901 389 MobiDBLite consensus disorder prediction 317 349 - -
Cmu02g1901 389 MobiDBLite consensus disorder prediction 366 389 - -
Cmu02g1901 389 Coils Coil 254 285 - -
Cmu02g1901 389 FunFam probable transcription factor PosF21 189 242 - -
Cmu02g1901 389 Gene3D - 189 242 - -
Cmu02g1901 389 MobiDBLite consensus disorder prediction 20 34 - -
Cmu02g1901 389 Pfam bZIP transcription factor 190 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1901 Cmu-Chr2:32933899 Cmu07g0562 Cmu-Chr7:6859893 7.20E-75 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5805 PF00170 bZIP_1 1.30E-08 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1901 - - - 0.0