Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1914 ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCGGCCCAACCTTTGGCCATCGGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCCCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCTTTCTTCACTATCCCCCCTGGTATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCCGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCAACAGAACATCAAACAAGAACACAACAACTTTACTGAACTCTCATTTCCTCGTACTCATCACACCACAAGATCTTCATCATCATCAATGTTTCAACCCTCTTCAACAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGCCATGAACGGCGGCTCCGAAGCGGAGCAGCGGGCAGAATGGGAGTTGAGAAAACGAGGAACTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATCGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGAAGGTCATCATCGTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCCGCAGCTATGGCGGCAGAGCCAAAGAATTCAATTGCCTCTGATTCCCTCACCACGCCGGAGGATTCTTCAATCACGATTGGGGATGATGATGATGATTCCCACGGAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTTCAGTAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATTCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCAGCGGCGGCGGTAGACCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACGGAGGTGGCAACCGACGACCGAGTTCAGAGATCTGTAGTGGTAATAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTGGATGACATATTTATGGGTTGTTATTAG 1365 45.42 MVMEFLFSSNSVEDPSGGPTFGHRRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHQQNIKQEHNNFTELSFPRTHHTTRSSSSSMFQPSSTVQSQRWGCEAAMNGGSEAEQRAEWELRKRGTEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSSSSSSLLSEALPAAMAAEPKNSIASDSLTTPEDSSITIGDDDDDSHGADAKRWKSESEKEIMSSVGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGSGGGRPILISSEGSNNDVASNGGGNRRPSSEICSGNNGLWELTNMVWRSKEEAVDDIFMGCY 454
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 33060920 33065975 + CmPI595203_02g019140.1 Cmu02g1914 409963
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1914 454 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 393 IPR044810 GO:0003700(InterPro)
Cmu02g1914 454 SUPERFAMILY WRKY DNA-binding domain 168 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 MobiDBLite consensus disorder prediction 217 246 - -
Cmu02g1914 454 FunFam WRKY transcription factor 57 314 388 - -
Cmu02g1914 454 MobiDBLite consensus disorder prediction 387 422 - -
Cmu02g1914 454 ProSiteProfiles WRKY domain profile. 323 388 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 ProSiteProfiles WRKY domain profile. 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 MobiDBLite consensus disorder prediction 282 303 - -
Cmu02g1914 454 MobiDBLite consensus disorder prediction 230 246 - -
Cmu02g1914 454 SMART WRKY_cls 328 387 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 SMART WRKY_cls 168 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 Pfam WRKY DNA -binding domain 169 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 MobiDBLite consensus disorder prediction 400 422 - -
Cmu02g1914 454 MobiDBLite consensus disorder prediction 83 103 - -
Cmu02g1914 454 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 MobiDBLite consensus disorder prediction 119 143 - -
Cmu02g1914 454 Gene3D WRKY domain 313 389 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 Gene3D WRKY domain 155 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu02g1914 454 MobiDBLite consensus disorder prediction 261 308 - -
Cmu02g1914 454 FunFam WRKY transcription factor 156 228 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1914 Cmu-Chr2:33060920 Cmu03g0639 Cmu-Chr3:623807 1.80E-77 dispersed
Cmu02g1914 Cmu-Chr2:33060920 Cmu05g2447 Cmu-Chr5:33516691 2.20E-59 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5807 PF03106 WRKY 1.50E-22 CL0274 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1914 K13424 - mdm:103447297 358.607