Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu02g1914 | ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCGGCCCAACCTTTGGCCATCGGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCCCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCTTTCTTCACTATCCCCCCTGGTATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCCGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCAACAGAACATCAAACAAGAACACAACAACTTTACTGAACTCTCATTTCCTCGTACTCATCACACCACAAGATCTTCATCATCATCAATGTTTCAACCCTCTTCAACAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGCCATGAACGGCGGCTCCGAAGCGGAGCAGCGGGCAGAATGGGAGTTGAGAAAACGAGGAACTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATCGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGAAGGTCATCATCGTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCCGCAGCTATGGCGGCAGAGCCAAAGAATTCAATTGCCTCTGATTCCCTCACCACGCCGGAGGATTCTTCAATCACGATTGGGGATGATGATGATGATTCCCACGGAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTTCAGTAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATTCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCAGCGGCGGCGGTAGACCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACGGAGGTGGCAACCGACGACCGAGTTCAGAGATCTGTAGTGGTAATAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTGGATGACATATTTATGGGTTGTTATTAG | 1365 | 45.42 | MVMEFLFSSNSVEDPSGGPTFGHRRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHQQNIKQEHNNFTELSFPRTHHTTRSSSSSMFQPSSTVQSQRWGCEAAMNGGSEAEQRAEWELRKRGTEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSSSSSSLLSEALPAAMAAEPKNSIASDSLTTPEDSSITIGDDDDDSHGADAKRWKSESEKEIMSSVGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGSGGGRPILISSEGSNNDVASNGGGNRRPSSEICSGNNGLWELTNMVWRSKEEAVDDIFMGCY | 454 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 33060920 | 33065975 | + | CmPI595203_02g019140.1 | Cmu02g1914 | 409963 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu02g1914 | 454 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 99 | 393 | IPR044810 | GO:0003700(InterPro) | |
| Cmu02g1914 | 454 | SUPERFAMILY | WRKY DNA-binding domain | 168 | 227 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 217 | 246 | - | - | |
| Cmu02g1914 | 454 | FunFam | WRKY transcription factor 57 | 314 | 388 | - | - | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 387 | 422 | - | - | |
| Cmu02g1914 | 454 | ProSiteProfiles | WRKY domain profile. | 323 | 388 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | ProSiteProfiles | WRKY domain profile. | 169 | 227 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 282 | 303 | - | - | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 230 | 246 | - | - | |
| Cmu02g1914 | 454 | SMART | WRKY_cls | 328 | 387 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | SMART | WRKY_cls | 168 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | Pfam | WRKY DNA -binding domain | 329 | 386 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | Pfam | WRKY DNA -binding domain | 169 | 225 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 400 | 422 | - | - | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 83 | 103 | - | - | |
| Cmu02g1914 | 454 | SUPERFAMILY | WRKY DNA-binding domain | 320 | 388 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 119 | 143 | - | - | |
| Cmu02g1914 | 454 | Gene3D | WRKY domain | 313 | 389 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | Gene3D | WRKY domain | 155 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu02g1914 | 454 | MobiDBLite | consensus disorder prediction | 261 | 308 | - | - | |
| Cmu02g1914 | 454 | FunFam | WRKY transcription factor | 156 | 228 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu02g1914 | Cmu-Chr2:33060920 | Cmu03g0639 | Cmu-Chr3:623807 | 1.80E-77 | dispersed | |
| Cmu02g1914 | Cmu-Chr2:33060920 | Cmu05g2447 | Cmu-Chr5:33516691 | 2.20E-59 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5807 | PF03106 | WRKY | 1.50E-22 | CL0274 | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu02g1914 | K13424 | - | mdm:103447297 | 358.607 |