Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g1926 ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCACCTTATTTCCCTTCCGATGACCCTTTCAAATTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAATAGAACAGAGAGCAGATGCAGTGAGCAGTATGGTATATGAAGCGAGTGCAAGAATGCGGGATCCAGTGTATGGTTGTGTAAGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGAGCAGCACAAGCAGAAATTTTGACTTTGCATATGCAGCAACAAGCAACTCCAACAACATTTCCGACGACGACGACCCACACAGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA 486 44.86 MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPIEQRADAVSSMVYEASARMRDPVYGCVRTISFLQNEVSRLEMQLGAAQAEILTLHMQQQATPTTFPTTTTHTDQDDQNLVIFSNADSSNSFHIFQEEGDYYPLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33169525 33170298 + CmPI595203_02g019260.1 Cmu02g1926 409975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g1926 161 Coils Coil 86 106 - -
Cmu02g1926 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cmu02g1926 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 126 - -
Cmu02g1926 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1926 Cmu-Chr2:33169525 Cmu09g2153 Cmu-Chr9:37633605 8.50E-38 dispersed
Cmu02g1926 Cmu-Chr2:33169525 Cmu07g0502 Cmu-Chr7:5808766 1.10E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5808 PF03195 LOB 1.40E-39 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g1926 - - - 0.0