Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2002 ATGGCCACTACCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATTCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTAGATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACTAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAACTTGGTTCTAATCACCAACGTCGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 777 53.02 MATTISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33783402 33785119 + CmPI595203_02g020020.1 Cmu02g2002 410051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2002 258 PANTHER EXPANSIN-A15 10 256 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 CDD DPBB_EXPA_N 31 159 - -
Cmu02g2002 258 Gene3D - 164 256 IPR036749 -
Cmu02g2002 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cmu02g2002 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cmu02g2002 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cmu02g2002 258 Gene3D - 20 160 IPR036908 -
Cmu02g2002 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cmu02g2002 258 FunFam Expansin 21 160 - -
Cmu02g2002 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cmu02g2002 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cmu02g2002 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cmu02g2002 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cmu02g2002 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cmu02g2002 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cmu02g2002 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cmu02g2002 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cmu02g2002 258 FunFam Expansin 164 256 - -
Cmu02g2002 258 SMART dpbb_1 67 154 IPR007112 -
Cmu02g2002 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0824 Cmu-Chr1:9658926 Cmu02g2002 Cmu-Chr2:33783402 1.90E-74 dispersed
Cmu02g0327 Cmu-Chr2:3007828 Cmu02g2002 Cmu-Chr2:33783402 2.40E-73 dispersed
Cmu02g2002 Cmu-Chr2:33783402 Cmu07g0561 Cmu-Chr7:6844854 7.10E-103 dispersed
Cmu02g2002 Cmu-Chr2:33783402 Cmu03g0763 Cmu-Chr3:1825738 1.20E-137 wgd
Cmu02g2002 Cmu-Chr2:33783402 Cmu04g0854 Cmu-Chr4:23047064 8.80E-138 wgd
Cmu02g2002 Cmu-Chr2:33783402 Cmu07g0379 Cmu-Chr7:3820281 2.40E-135 wgd
Cmu02g2002 Cmu-Chr2:33783402 Cmu09g1886 Cmu-Chr9:34982194 2.20E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2002 - - - 0.0