Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2013 ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTTGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACACTGAAATATCCCATTGAACATGGTATAGTGAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTTCTCACTGAAGCACCTCTGAACCCTAAGGCAAACCGTGAAAAAATGACCCAAATCATGTTCGAAACCTTCAACACTCCTGCCATGTATGTCGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTCTTAGATTCTGGAGACGGTGTTAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTTCCCCACGCCATACTCCGTCTCGACCTTGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTTGACTTTGAGCAAGAACTTGAAACTTCCAAGACTGGTTCATCTGTTGAGAAGAGTTACGAACTGCCTGATGGGCAGGTAATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATTCATGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATAAAGGTGGTAGCCCCACCCGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCCCTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATCGTGCACAGGAAATGCTTCTGA 1134 46.21 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33870407 33872256 - CmPI595203_02g020130.1 Cmu02g2013 410062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2013 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmu02g2013 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cmu02g2013 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmu02g2013 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmu02g2013 377 PRINTS Actin signature 51 62 IPR004000 -
Cmu02g2013 377 PRINTS Actin signature 238 254 IPR004000 -
Cmu02g2013 377 PRINTS Actin signature 63 85 IPR004000 -
Cmu02g2013 377 PRINTS Actin signature 142 161 IPR004000 -
Cmu02g2013 377 PRINTS Actin signature 28 37 IPR004000 -
Cmu02g2013 377 PRINTS Actin signature 117 130 IPR004000 -
Cmu02g2013 377 FunFam Putative actin-related protein 5 341 369 - -
Cmu02g2013 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmu02g2013 377 Gene3D - 140 340 - -
Cmu02g2013 377 Pfam Actin 5 377 IPR004000 -
Cmu02g2013 377 FunFam Major actin 259 340 - -
Cmu02g2013 377 SMART actin_3 7 377 IPR004000 -
Cmu02g2013 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cmu02g2013 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmu02g2013 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmu02g2013 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Cmu02g2013 377 Gene3D - 10 371 - -
Cmu02g2013 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmu02g2013 377 FunFam Actin, muscle 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2013 Cmu-Chr2:33870407 Cmu10g2489 Cmu-Chr10:31536873 3.70E-217 dispersed
Cmu05g2662 Cmu-Chr5:35182656 Cmu02g2013 Cmu-Chr2:33870407 1.60E-59 transposed
Cmu06g1548 Cmu-Chr6:26728523 Cmu02g2013 Cmu-Chr2:33870407 3.70E-75 transposed
Cmu09g0389 Cmu-Chr9:3744793 Cmu02g2013 Cmu-Chr2:33870407 8.70E-55 transposed
Cmu02g2013 Cmu-Chr2:33870407 Cmu04g0858 Cmu-Chr4:23120473 6.30E-217 wgd
Cmu02g2013 Cmu-Chr2:33870407 Cmu09g1894 Cmu-Chr9:35047081 1.00E-214 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2013 K10355 - mdm:103424317 752.281