Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2020 ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCGCCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCAATGACTCAGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAAAATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATTATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACTTCGAAAGCTGA 1980 44.95 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTQAERSKYEALLHKLTSGKIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNFES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33917099 33920722 + CmPI595203_02g020200.1 Cmu02g2020 410069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2020 659 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Cmu02g2020 659 CDD MLKL_NTD 31 139 - -
Cmu02g2020 659 Gene3D - 340 652 IPR011989 -
Cmu02g2020 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu02g2020 659 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu02g2020 659 Coils Coil 95 115 - -
Cmu02g2020 659 FunFam RING-type E3 ubiquitin transferase 337 632 - -
Cmu02g2020 659 SUPERFAMILY RING/U-box 252 332 - -
Cmu02g2020 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515(InterPro)
Cmu02g2020 659 PANTHER U BOX DOMAIN-CONTAINING 30 627 - -
Cmu02g2020 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Cmu02g2020 659 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu02g2020 659 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Cmu02g2020 659 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cmu02g2020 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cmu02g2020 659 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Cmu02g2020 659 FunFam RING-type E3 ubiquitin transferase 7 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1674 Cmu-Chr1:30467729 Cmu02g2020 Cmu-Chr2:33917099 1.40E-20 dispersed
Cmu02g2020 Cmu-Chr2:33917099 Cmu07g0660 Cmu-Chr7:10848268 1.30E-60 dispersed
Cmu01g2087 Cmu-Chr1:33742439 Cmu02g2020 Cmu-Chr2:33917099 6.40E-14 transposed
Cmu02g0992 Cmu-Chr2:15305227 Cmu02g2020 Cmu-Chr2:33917099 9.40E-88 transposed
Cmu05g2175 Cmu-Chr5:31213570 Cmu02g2020 Cmu-Chr2:33917099 7.40E-122 transposed
Cmu07g0263 Cmu-Chr7:2580561 Cmu02g2020 Cmu-Chr2:33917099 4.10E-37 transposed
Cmu07g0850 Cmu-Chr7:21646842 Cmu02g2020 Cmu-Chr2:33917099 1.70E-24 transposed
Cmu02g2020 Cmu-Chr2:33917099 Cmu03g0778 Cmu-Chr3:1954425 3.10E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2020 K27628 - csv:101221150 1140.18