Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2021 ATGGCTCACTCTTCTCTTCCAATCTTCTTAGATCCTCCAAATTGGCATCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCTTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCGTCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGGTAATTCAAGATCAATAATGTCAAGAAGCTGCAACAACATGGAGAGCAGTAGTACAATGAGGGATTTCCCATCACATTCTTCTTTGCCTTCATTAAATATCCTTCCATCTCTTCAACAACATTTTTCTCGTAATTTTGGAAACAACTTCCCCGGAATTCACATCAATAATTCCGCAGTCGCCAGAGAATACGACGTCGAATGGCAACAACAACAACAACCATTCATCGTGGCCGGACTAGAATCTCCGACGACTGCGACAACAACTGCCGCAGCATACACACAAGCTGAAGTCAACAACAACGGCAACAACAACAACTTTGTTGCTAACTCATTACAACAAGCAGCTGGTTTAGTACAATACAATAATAACTGTCATCAACAACTGCAAAATCTGACACCCTTTTCCAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAATATTATTATCAAATTTCTTACGACCAAATGATCACAACAGCCAGTTTTGGGGAAGTAATCATCAAAATTCATGGACGGATCATTTGTCAGCTCTCAGTTCTTCTTCAAGCAGCCATCTTTTGTAA 1020 45.59 MAHSSLPIFLDPPNWHQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMGNSRSIMSRSCNNMESSSTMRDFPSHSSLPSLNILPSLQQHFSRNFGNNFPGIHINNSAVAREYDVEWQQQQQPFIVAGLESPTTATTTAAAYTQAEVNNNGNNNNFVANSLQQAAGLVQYNNNCHQQLQNLTPFSRIPMKNEEQNQEQGILLSNFLRPNDHNSQFWGSNHQNSWTDHLSALSSSSSSHLL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33927175 33928923 - CmPI595203_02g020210.1 Cmu02g2021 410070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2021 339 MobiDBLite consensus disorder prediction 36 59 - -
Cmu02g2021 339 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu02g2021 339 MobiDBLite consensus disorder prediction 138 174 - -
Cmu02g2021 339 MobiDBLite consensus disorder prediction 11 30 - -
Cmu02g2021 339 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu02g2021 339 MobiDBLite consensus disorder prediction 121 174 - -
Cmu02g2021 339 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu02g2021 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 264 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2021 Cmu-Chr2:33927175 Cmu02g2076 Cmu-Chr2:34451660 3.00E-29 dispersed
Cmu10g2821 Cmu-Chr10:34753018 Cmu02g2021 Cmu-Chr2:33927175 1.00E-37 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu03g0779 Cmu-Chr3:1974577 5.20E-37 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu03g0864 Cmu-Chr3:3146159 5.20E-29 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu04g0866 Cmu-Chr4:23198980 2.60E-36 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu07g0371 Cmu-Chr7:3678771 5.40E-42 wgd
Cmu02g2021 Cmu-Chr2:33927175 Cmu09g1907 Cmu-Chr9:35135199 1.90E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5817 PF02701 zf-Dof 4.80E-33 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2021 - - - 0.0