Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2052 ATGGATTGTGGAAGAAGATTTGGATTGCTGTTCTGGGTTTTGTTTATTTCCTTGCTGCCTTTCATTTCTTGTTTGTTTAAGCCGGTAGATAAGTATCTTATTGACTGTGGATCGGCTTCTAATGTCTCTGTGGGTAATCGTGTTTTCATGGCCGATAATTTGGCTTCACAGCTGCTTTCAACCCCACAACCCATTCTGGCTGATTCTAATACGTCTTCAGTACCCGCTAGTTCTTCTAATGATTCCTTGCTGTTCCAAACGGCTAGAATTTTCACTGGAACATCAAAATACAAGTTTCCAATTAAGGCTGGAAGGCACTGGATCCGTCTCTATTTCTATCCATTTGTGTTTTCTAGCTTCAATATGAGTGCTGCAAATTTTAGTGTTTCGACCCAAGATTTTGTTCTGCTGCGGGATTTAGTTGTAGGGAAGAATCCTATAGTCAAAGAATTCTCTGTGAACATAACGTCAGATACTCTTGAAGTTATCTTTGTTCCTGTTAATGGCTCCATTGCATATGTGAATGCCATAGATGTTACTTCTGTTCCTGACATTGTCATTCTTGATGAAGCCAATTTGTTAGAACCATCTGGTAAATTTCAAGGGCTGTCTAACCAGGCATATGAGACGGTTGCTAGGGTTAATATGGGTGGGCCGAGTGTCGCTCCTGATAATGATCCTCTTACACGAAGTTGGGTCTCTGATGAAGGCTTTCTAGTTAATAAGAATTCTGCAACAAGTTTCTCTAACATTGCAGCTGTTACATACAGTGCTGATGGGGCAGCGCCAGAGATTGCTCCAAATGTTGTCTACGGTACCCTCACTGAGATGAACTCGAAAGATGATCCAAACAGCAATTTCAATGTGACATGGCGGTTTAAAGTGGATCCTGAGTTTCAGTATCTTGTTCGGTTTCACTTCTGTGACATTGTGAGCAAATCTCTACACCAACTTTATTTCAGTGTTTACATTGATACGTGGCTGGTTGTTCAGGATCTAGATCTCAGTATTCCTCTTAACAACGCTCTGAGCACTCCATACTATATGGACTATGTTACAGGGGTGATCAAGAATGACATACTTCTTGTGAGTATTGGCCCATCGACTATAGCCAATGTGTATCCAAATGCCATTCTAAATGGTCTGGAAATCATGAAAATGAACAATTCAGTTGGCAGTCTGAGTGGGGAAGATGCTGTAATTAGTTTTCCAAATACGAATTCTTCAAGTAAGCACATTGGCGTCATTGTGGGTGTGAGTGTTGGGGCATTTGTTGCAGCTATATTGGTTGGGATTCTGTTTATGCTACACAGACGAAAAAGGAAGGGAATGCATCAAGCTCCATCAAAAACGTGGATTTCAATATCCACTGCTGGAGGAATGTCACACACTATGGGAAGTAAATACTCAAATGGCACGATCACAAGTGCTGCTTCCAACTTTGGATATCGCATACCTTTTGCAACAGTTCAAGAGGCTACGAATAACTTTGATGAGAGTTGGGTTATTGGTATTGGTGGGTTTGGGAAAGTATACAAAGGAGTTTTAAATGATGGCACCAAAGTTGCTGTGAAGAGGGGTAATCCACGTTCCCAACAAGGACTGGCAGAGTTTCAAACTGAAATCGAGATGCTGTCTCAGTTCCGTCATCGTCATCTTGTTTCATTGATTGGGTACTGTGATGAGAGGAATGAGATGATATTGATTTATGAGTACATGGAACAGGGGACCCTGAAGAGTCATCTATATGGTTCTGATTTCCCTAGTTTGAGCTGGAAGGAGAGATTAGAGGTCTGCATCGGAGCTGCTAGAGGACTTCATTACCTCCACACTGGTTATGCTAAACCGGTTATTCATCGTGATGTGAAGTCTGCGAATATTTTGCTCGATGAAACTCTCATGGCAAAGGTTGCTGACTTTGGGCTTTCAAAGACTGGACCTGAGATTGACCAAACCCATGTCAGTACAGCTGTGAAAGGAAGTTTTGGGTACCTTGATCCTGAATATTTCAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGGGTCGTTTTGTTTGAAGTACTTTGTGCAAGACCTGTCATAGATCCAACCCTTCCCAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAAAGGGCAGTTGGACCAAATCATTGATCCTACTTTAGTAGGAAAAATTAGACCAACTTCTCTTAGAAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCTGACTATGGAGTTGACAGGCCATCTATGGGAGACGTGTTATGGAATTTGGAGTATGCACTTCAGCTACAAGAAGCTGTCATTGAAGTTGATCCTGAAGATAACAGTACGAATATGATTGGCGAGCTCTCTCCACAAATTAACAATTTCAATGACATCGAGGCAGGTGTTTCTGCCACACGGTTTGACATTCCGGGTGCGGATGATCTCTCTGGAGTCTCCATGAGTAGGGTGTTCTCTCAGCTGGTGAAATCTGAGGGTAGATGA 2517 41.99 MDCGRRFGLLFWVLFISLLPFISCLFKPVDKYLIDCGSASNVSVGNRVFMADNLASQLLSTPQPILADSNTSSVPASSSNDSLLFQTARIFTGTSKYKFPIKAGRHWIRLYFYPFVFSSFNMSAANFSVSTQDFVLLRDLVVGKNPIVKEFSVNITSDTLEVIFVPVNGSIAYVNAIDVTSVPDIVILDEANLLEPSGKFQGLSNQAYETVARVNMGGPSVAPDNDPLTRSWVSDEGFLVNKNSATSFSNIAAVTYSADGAAPEIAPNVVYGTLTEMNSKDDPNSNFNVTWRFKVDPEFQYLVRFHFCDIVSKSLHQLYFSVYIDTWLVVQDLDLSIPLNNALSTPYYMDYVTGVIKNDILLVSIGPSTIANVYPNAILNGLEIMKMNNSVGSLSGEDAVISFPNTNSSSKHIGVIVGVSVGAFVAAILVGILFMLHRRKRKGMHQAPSKTWISISTAGGMSHTMGSKYSNGTITSAASNFGYRIPFATVQEATNNFDESWVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDETLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDPTLVGKIRPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVIEVDPEDNSTNMIGELSPQINNFNDIEAGVSATRFDIPGADDLSGVSMSRVFSQLVKSEGR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34154955 34157471 - CmPI595203_02g020520.1 Cmu02g2052 410101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2052 838 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Cmu02g2052 838 CDD STKc_IRAK 503 768 - -
Cmu02g2052 838 FunFam receptor-like protein kinase FERONIA 461 572 - -
Cmu02g2052 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g2052 838 Gene3D - 206 389 - -
Cmu02g2052 838 Gene3D - 31 183 - -
Cmu02g2052 838 Pfam Protein tyrosine and serine/threonine kinase 502 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu02g2052 838 FunFam Putative receptor-like protein kinase 31 183 - -
Cmu02g2052 838 FunFam Receptor-like protein kinase FERONIA 573 788 - -
Cmu02g2052 838 FunFam Receptor-like protein kinase FERONIA 207 389 - -
Cmu02g2052 838 SMART serkin_6 497 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2052 838 Gene3D Phosphorylase Kinase; domain 1 460 572 - -
Cmu02g2052 838 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu02g2052 838 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524(InterPro)
Cmu02g2052 838 Pfam Malectin-like domain 34 386 IPR024788 -
Cmu02g2052 838 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Cmu02g2052 838 PANTHER OS07G0166700 PROTEIN 484 775 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1359 Cmu-Chr2:27139669 Cmu02g2052 Cmu-Chr2:34154955 7.20E-210 dispersed
Cmu02g2052 Cmu-Chr2:34154955 Cmu06g1650 Cmu-Chr6:27638867 1.40E-216 dispersed
Cmu06g0339 Cmu-Chr6:3956838 Cmu02g2052 Cmu-Chr2:34154955 3.40E-63 dispersed
Cmu02g2052 Cmu-Chr2:34154955 Cmu11g1831 Cmu-Chr11:30481069 4.40E-239 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75336 PF12819 Malectin_like 5.10E-31 CL0202 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2052 - - - 0.0