Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu02g2070 | ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCCTCTCAGAATGAGAACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAGTCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGTGGCGATGACGACTCGTGTTCCACACGCGCTGGTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATAGGTGGAGCGCTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATACGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCGGCAGTGAAGGTGGGCGGAACATGCACGATTTGAATTTAGGGATTTCACCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAACGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTAGCGATCCACCTTTGAAAGGACCGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACTAGCTTCTTTCCTTCTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCACCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATTCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACCGCCCATAACCTCCATTTCACTTCTGCCAAGGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGTGA | 1476 | 50.0 | MFDLNLNVDSPDASQNENSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFSFEILKAGSANDVVTKELFPIGGALNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGERISEGGSEGGRNMHDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNADAAVSDPPLKGPVMTSEHAPLWNGLQTSFFPSEEIVTEKRLALGSSQGVTPNWGWQIHSQVNSTQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTSAKASLNSPQYHHQLNPQQ | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34359105 | 34362973 | - | CmPI595203_02g020700.1 | Cmu02g2070 | 410119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu02g2070 | 491 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | Pfam | AP2 domain | 248 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | SUPERFAMILY | DNA-binding domain | 156 | 214 | IPR016177 | GO:0003677(InterPro) | |
Cmu02g2070 | 491 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 66 | 342 | - | - | |
Cmu02g2070 | 491 | CDD | AP2 | 157 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | FunFam | AP2-like ethylene-responsive transcription factor | 248 | 308 | - | - | |
Cmu02g2070 | 491 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - | |
Cmu02g2070 | 491 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677(InterPro) | |
Cmu02g2070 | 491 | MobiDBLite | consensus disorder prediction | 131 | 158 | - | - | |
Cmu02g2070 | 491 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | Gene3D | AP2/ERF domain | 156 | 214 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | FunFam | AP2-like ethylene-responsive transcription factor | 156 | 215 | - | - | |
Cmu02g2070 | 491 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu02g2070 | 491 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1645 | Cmu-Chr1:30163280 | Cmu02g2070 | Cmu-Chr2:34359105 | 2.60E-90 | dispersed | |
Cmu02g1227 | Cmu-Chr2:25101785 | Cmu02g2070 | Cmu-Chr2:34359105 | 4.40E-90 | dispersed | |
Cmu02g1374 | Cmu-Chr2:27377319 | Cmu02g2070 | Cmu-Chr2:34359105 | 7.90E-70 | dispersed | |
Cmu02g2070 | Cmu-Chr2:34359105 | Cmu07g1382 | Cmu-Chr7:29152551 | 4.70E-47 | dispersed | |
Cmu10g2781 | Cmu-Chr10:34420501 | Cmu02g2070 | Cmu-Chr2:34359105 | 2.10E-116 | wgd | |
Cmu02g2070 | Cmu-Chr2:34359105 | Cmu04g0914 | Cmu-Chr4:23629755 | 1.70E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5822 | PF00847 | AP2 | 3.10E-09 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu02g2070 | K09284 | - | csv:101222024 | 909.827 |