Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2081 ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 591 49.07 MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34495487 34496621 + CmPI595203_02g020810.1 Cmu02g2081 410130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2081 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cmu02g2081 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cmu02g2081 196 Coils Coil 114 141 - -
Cmu02g2081 196 MobiDBLite consensus disorder prediction 1 20 - -
Cmu02g2081 196 MobiDBLite consensus disorder prediction 1 30 - -
Cmu02g2081 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2081 Cmu-Chr2:34495487 Cmu03g0858 Cmu-Chr3:3099391 2.40E-55 dispersed
Cmu02g1382 Cmu-Chr2:27498237 Cmu02g2081 Cmu-Chr2:34495487 4.40E-51 transposed
Cmu02g2081 Cmu-Chr2:34495487 Cmu03g0856 Cmu-Chr3:3070977 1.00E-45 wgd
Cmu02g2081 Cmu-Chr2:34495487 Cmu09g1951 Cmu-Chr9:35582584 3.70E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5824 PF03195 LOB 3.80E-41 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2081 - - - 0.0