Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu02g2094 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGCTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACGCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAACAAATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTATACACAGCTTACTCTCCTTCCCTTGCCAGAGTTAGTAGGCACTGGTCTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATGGGGCTGATGGAGATGGGAGTGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTACTTCTGGCGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGTTTCAATTGTTGGCAGCCAAAATTCTTGTGCAAACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCGGTGACTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTGTTGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCGTCTCCAAGACTGAAGAAGCTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATAGGTGTCGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGAAAACCAGAATATAGTTTAGGTGTTTGGGGGAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCTAATGGTGCCCAAAACATGTATTTCCCTCATAGTGAAATGTACAGTACTGGCCAAGCGGCCATGATGCGCTCAAATGATAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGGTGCTAGTGTTATCAGGACTAAAATGGAAAGGACTAATCATTCACTTGATCGGGAGTCTCTACATCTAGTGTCTGCTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGATGAAAATGTGAGTGAGAACCCAACTGGCTGTAAACTTTTTGGCTTTTCATTGACTACGGAAACTGCTACAAACATGCAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATTGATCTCTCTAGGCTGAATGGCTATCCCGATCTGATTTCTGAACTGGAGCGGTTGTTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGATGGCGAGTGTTGTACACTGACAACGAAAATGACGTAATGGTTGTTGGGGATTATCCATGGTGTGACTTCTGTGACGCGGTTTCCAAAATCCATATACACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAGGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACAGTACTCGAAGTCGGTAGCTTTGCTGCCATGAACGGCGTCATATAG 2439 44.53 MEIDLNQTASEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSPTPASSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELVGTGLEGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLTSGDAVLFLRGENGELRLGIRRAVRPRNGLPVSIVGSQNSCANDLARVVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENIGVVSPFYGCDTAKRSLEFDVRSSAQQNQVSGGVEKLNIGDYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNGAQNMYFPHSEMYSTGQAAMMRSNDSNFPRENALFNPSAVGASVIRTKMERTNHSLDRESLHLVSAPPTLGSNMRNSKDENVSENPTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYPDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWCDFCDAVSKIHIHTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSPPTVLEVGSFAAMNGVI 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34577424 34584101 - CmPI595203_02g020940.1 Cmu02g2094 410143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu02g2094 812 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677(InterPro)
Cmu02g2094 812 Pfam Auxin response factor 296 376 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu02g2094 812 MobiDBLite consensus disorder prediction 630 648 - -
Cmu02g2094 812 SMART B3_2 169 271 IPR003340 GO:0003677(InterPro)
Cmu02g2094 812 FunFam Auxin response factor 332 402 - -
Cmu02g2094 812 CDD B3_DNA 167 269 IPR003340 GO:0003677(InterPro)
Cmu02g2094 812 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 764 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu02g2094 812 SUPERFAMILY CAD & PB1 domains 676 753 - -
Cmu02g2094 812 FunFam Auxin response factor 167 271 - -
Cmu02g2094 812 Gene3D - 167 271 IPR015300 -
Cmu02g2094 812 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
Cmu02g2094 812 Gene3D - 333 402 - -
Cmu02g2094 812 ProSiteProfiles PB1 domain profile. 674 756 IPR053793 -
Cmu02g2094 812 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677(InterPro)
Cmu02g2094 812 Pfam AUX/IAA family 652 758 IPR033389 -
Cmu02g2094 812 Gene3D - 670 763 - -
Cmu02g2094 812 MobiDBLite consensus disorder prediction 629 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2094 Cmu-Chr2:34577424 Cmu06g1875 Cmu-Chr6:29494682 1.40E-136 dispersed
Cmu01g0172 Cmu-Chr1:1699592 Cmu02g2094 Cmu-Chr2:34577424 6.00E-113 transposed
Cmu01g2280 Cmu-Chr1:35083595 Cmu02g2094 Cmu-Chr2:34577424 2.80E-128 transposed
Cmu07g1130 Cmu-Chr7:26415172 Cmu02g2094 Cmu-Chr2:34577424 1.30E-114 transposed
Cmu09g0906 Cmu-Chr9:8976003 Cmu02g2094 Cmu-Chr2:34577424 3.40E-120 transposed
Cmu11g0026 Cmu-Chr11:729583 Cmu02g2094 Cmu-Chr2:34577424 4.50E-125 transposed
Cmu02g2094 Cmu-Chr2:34577424 Cmu04g0940 Cmu-Chr4:23861307 1.60E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5825 PF02362 B3 7.10E-21 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu02g2094 K14486 - csv:101212503 1498.03